PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631859.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 647aa    MW: 72894.9 Da    PI: 9.3412
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.5e-24102202299
                     EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      k+ltpsdv+++g l++pk+ a+e+       +  +   ++l+ +d++g +W++++ yr++s+r+++++GW++Fv+a++L +gD+++F   + ++
  XP_009631859.1 102 SKKLTPSDVNTHGGLSIPKQLADECfpplnndQDFP--AQDLVAKDLNGLEWKFRHVYRGQSRRHLISNGWSRFVSAKKLVAGDTLIFV--RGKN 192
                     599************************998653333..348************************************************..3489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      el+v v+r+
  XP_009631859.1 193 YELYVAVRRA 202
                     999**99986 PP
2Auxin_resp84.62e-28227314183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.....sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha+s++++F+++Y+P+++++ F++++++++ka ++ + vGm f m fe+ +    r+     sGt+v+v+d+dp+rWp+S Wr+Lk
  XP_009631859.1 227 AYHAVSSGTMFTIYYRPWTCPAAFIIPYNQYMKASEIDYEVGMTFNMPFESHELDCGRTvcpifSGTIVDVKDFDPIRWPGSDWRCLK 314
                     689************************************************98876654457789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-2992214IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-3794215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-21101201No hitNo description
SMARTSM010193.3E-22101203IPR003340B3 DNA binding domain
PROSITE profilePS5086314.015101203IPR003340B3 DNA binding domain
PfamPF023622.2E-21102202IPR003340B3 DNA binding domain
PfamPF065071.5E-25227314IPR010525Auxin response factor
PfamPF023095.5E-7550633IPR033389AUX/IAA domain
PROSITE profilePS5174516.751555637IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MGNDDKGRNS GLHRELWLAC SGPLVIVPSS GDMVFYYPQG HIEQIEACMN EDGLMPMPAY  60
NVPYKILCRV VSVRLQLGTR EPILAERSPL FSRAKSDVHT YSKKLTPSDV NTHGGLSIPK  120
QLADECFPPL NNDQDFPAQD LVAKDLNGLE WKFRHVYRGQ SRRHLISNGW SRFVSAKKLV  180
AGDTLIFVRG KNYELYVAVR RAKKQQTSSS TSILSSHYMQ HGMLSNAYHA VSSGTMFTIY  240
YRPWTCPAAF IIPYNQYMKA SEIDYEVGMT FNMPFESHEL DCGRTVCPIF SGTIVDVKDF  300
DPIRWPGSDW RCLKVKWNHA KLMPVRPERV SPWSIVAIGI TKRKRRSFSS YPSKAQPLDP  360
ANPFGVKDCL MKSSVEHSPP WNSRVLQGQE KAVNAYEENA FRRPHDLRQP PQRKLRWRRG  420
QVRLENQQHN HILDPWLDFI GKEVHGTSPS SNGFSNLQSS KIPSFASESL SIPKIVDYRN  480
SNSKGNVESE VMGSQPTGGS KLKLFGVDIL NGPESPSQHG SKLTHFGSFP AASKTVNFLE  540
QSKSTSGNSD TQCSRSCTKV LKYGCALGRS IDMSRVKGYG ELISELDKLF GFEGSLLDGS  600
KDWHVTYQDR EGNTKLLGDY PWSDFQAMVR KMFICPIGAD YLADRSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1001133518352Auxin response factor 1
4ldw_A1e-1001133518352Auxin response factor 1
4ldw_B1e-1001133518352Auxin response factor 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3402580.0DQ340258.1 Nicotiana tabacum ARF2-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631858.10.0PREDICTED: auxin response factor 2-like isoform X1
TrEMBLA0A1S3XP510.0A0A1S3XP51_TOBAC; Auxin response factor
STRINGXP_009631858.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-112auxin response factor 2