PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009631343.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 380aa MW: 41034.7 Da PI: 8.2235 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.5 | 1.9e-12 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H+p XP_009631343.1 49 EADCIYYLRTGFCGYGSRCRFNHPP 73 689********************97 PP | |||||||
2 | zf-CCCH | 37.5 | 4.1e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_009631343.1 98 QPVCQYYMRTGMCKFGASCKYHHPR 122 689********************96 PP | |||||||
3 | zf-CCCH | 36.4 | 9e-12 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f+++tG+Ck+G +CkF+H++ XP_009631343.1 143 GEKECLFYMKTGQCKFGITCKFHHPQ 168 7899********************97 PP | |||||||
4 | zf-CCCH | 31.9 | 2.3e-10 | 311 | 337 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ ++G Ck+G++C+++H+p XP_009631343.1 311 PGQPECQYYIKYGDCKFGSSCRYHHPP 337 5789*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.5E-6 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-10 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-6 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-7 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.554 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-9 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-5 | 100 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.446 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 143 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 147 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-4 | 310 | 337 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 310 | 338 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-7 | 312 | 337 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 314 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MERYSGNQPM EGAPVSEWTS PGGDTGLEEA MWQLSVGSGS ESYPERPNEA DCIYYLRTGF 60 CGYGSRCRFN HPPDRNLVMG AARAIGGGEE KYPERVGQPV CQYYMRTGMC KFGASCKYHH 120 PRQGGGSPAL MTHNIYGYPL RPGEKECLFY MKTGQCKFGI TCKFHHPQPA GVQVPTSAAR 180 PGAFPLPAAV PPPATYPAVQ SPYVQSAQQY GVVAGNWPFV RPTLLPGSYG TYGPMLFPPG 240 MVPVPGWTPY PASASQVPSL TTQPAAGAGP VYGLTQLSAS APAYMGPYTS LTASIGPSGS 300 IQKEHAFPER PGQPECQYYI KYGDCKFGSS CRYHHPPEWS GPKSGFILSA MGLPLRPSEL 360 YALILTVPCS DWKIILFGLS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631342.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q84W91 | 1e-124 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A1S4ANC2 | 0.0 | A0A1S4ANC2_TOBAC; zinc finger CCCH domain-containing protein 32-like | ||||
STRING | XP_009631342.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-123 | C3H family protein |