PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009631342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 488aa MW: 51449.7 Da PI: 8.1526 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.5e-12 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H+p XP_009631342.1 49 EADCIYYLRTGFCGYGSRCRFNHPP 73 689********************97 PP | |||||||
2 | zf-CCCH | 37 | 5.5e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_009631342.1 98 QPVCQYYMRTGMCKFGASCKYHHPR 122 689********************96 PP | |||||||
3 | zf-CCCH | 35.9 | 1.2e-11 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f+++tG+Ck+G +CkF+H++ XP_009631342.1 143 GEKECLFYMKTGQCKFGITCKFHHPQ 168 7899********************97 PP | |||||||
4 | zf-CCCH | 31.5 | 3.1e-10 | 311 | 337 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ ++G Ck+G++C+++H+p XP_009631342.1 311 PGQPECQYYIKYGDCKFGSSCRYHHPP 337 5789*********************97 PP | |||||||
5 | zf-CCCH | 35.4 | 1.9e-11 | 359 | 383 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C++++++G Ck+G++CkF H++ XP_009631342.1 359 APICSHYSQNGVCKFGPSCKFDHPM 383 589********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.709 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-6 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-10 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.554 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-7 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-5 | 100 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.446 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 143 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-9 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 310 | 338 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-4 | 310 | 337 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 312 | 337 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-5 | 314 | 337 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 355 | 382 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.756 | 356 | 384 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-7 | 356 | 383 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 359 | 383 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 361 | 381 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MERYSGNQPM EGAPVSEWTS PGGDTGLEEA MWQLSVGSGS ESYPERPNEA DCIYYLRTGF 60 CGYGSRCRFN HPPDRNLVMG AARAIGGGEE KYPERVGQPV CQYYMRTGMC KFGASCKYHH 120 PRQGGGSPAL MTHNIYGYPL RPGEKECLFY MKTGQCKFGI TCKFHHPQPA GVQVPTSAAR 180 PGAFPLPAAV PPPATYPAVQ SPYVQSAQQY GVVAGNWPFV RPTLLPGSYG TYGPMLFPPG 240 MVPVPGWTPY PASASQVPSL TTQPAAGAGP VYGLTQLSAS APAYMGPYTS LTASIGPSGS 300 IQKEHAFPER PGQPECQYYI KYGDCKFGSS CRYHHPPEWS GPKSGFILSA MGLPLRPGAP 360 ICSHYSQNGV CKFGPSCKFD HPMGISYSPS ASSLVDMPVA PYPVGSSVGT LAPSSSSSDL 420 KPELVSGSTK DGFSTQTSSM SSSSGSVGSM FSKGGPVSHS GVQQSIQNST SSSGSSSTGR 480 DGEAQTSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631342.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q84W91 | 1e-156 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A1S4ANC2 | 0.0 | A0A1S4ANC2_TOBAC; zinc finger CCCH domain-containing protein 32-like | ||||
STRING | XP_009631342.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-150 | C3H family protein |