PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631267.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 435aa    MW: 49200.2 Da    PI: 4.8927
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.86.1e-95434231373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkf 93 
                     l++lLl+cA+a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r +++  +     +++  ++ + +++++l  ++++ P+++f
  XP_009631267.1  43 LEKLLLHCANALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASRVCPTATNNYLYGSSN-LDQRRLMSVTELagYVDLIPWHRF 136
                     5799***************************************************888887766554444.33455555555577********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.... 181
                     ++ + N+aI++a+eg+++vHi+Df+i++++QWp+L++a+a+RpegppslRi + +   ++    + + ee+g+rLa+fA+  +vpfef+v+    
  XP_009631267.1 137 GFCVSNSAIYKAIEGHTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPPVpplLNVSSEEVGHRLANFAKFRDVPFEFQVIedln 231
                     ****************************************************988866668899999***********************96543 PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                     +   l++l++ +L+++ +Eal+Vn++  l +++de+ + +s   rd +L++vk+l+P +++vv++++d++++s+  r++ +++y +  fd+le+ 
  XP_009631267.1 232 YDMLLSQLSPLTLQLRDDEALVVNCQNWLRYMPDEQINGSSysSRDIFLDMVKELNPCIMTVVDEDSDLGNSSLTSRIATCFNYLWIPFDALETF 326
                     33356667888889999******************987776669*************************************************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                     lp++s++r  +E+  +g +i+n++  eg +r+er e  +k ++r+e++GF +vp+ e++ k++k+ll + +  g+ +++e++ lvl+Wk+++ v 
  XP_009631267.1 327 LPKDSRQRLDYEAD-IGHKIENIIGVEGVQRIERLECCNKFSQRMENSGFMSVPFCEETIKEVKSLLDERA-SGWGMKKEDDMLVLTWKGHNSVY 419
                     **************.*******************************************************9.8899******************* PP

            GRAS 370 vSaW 373
                     ++aW
  XP_009631267.1 420 ATAW 423
                     **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.84717405IPR005202Transcription factor GRAS
PfamPF035142.1E-9243423IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MRAELRGNST TIPIQNPNLF NNPQNSLAGA LKGCIGSLDG ACLEKLLLHC ANALENNDVT  60
LAQQVMWVLN NLASSNGDPN QRLTSWFLRA LISRASRVCP TATNNYLYGS SNLDQRRLMS  120
VTELAGYVDL IPWHRFGFCV SNSAIYKAIE GHTKVHILDF SITHCMQWPT LIDAIAKRPE  180
GPPSLRISVP SWRPPVPPLL NVSSEEVGHR LANFAKFRDV PFEFQVIEDL NYDMLLSQLS  240
PLTLQLRDDE ALVVNCQNWL RYMPDEQING SSYSSRDIFL DMVKELNPCI MTVVDEDSDL  300
GNSSLTSRIA TCFNYLWIPF DALETFLPKD SRQRLDYEAD IGHKIENIIG VEGVQRIERL  360
ECCNKFSQRM ENSGFMSVPF CEETIKEVKS LLDERASGWG MKKEDDMLVL TWKGHNSVYA  420
TAWILVPPQM DMTIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-561642311418Protein SHORT-ROOT
5b3h_E6e-561642311418Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631267.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_016470348.10.0PREDICTED: scarecrow-like protein 32, partial
TrEMBLA0A1S4A1320.0A0A1S4A132_TOBAC; scarecrow-like protein 32
STRINGXP_009631267.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-125GRAS family protein