PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009631239.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1759aa MW: 197877 Da PI: 5.3467

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009631239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	40	94	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k++k XP_009631239.1 40 KRKMKTASQLEILENTYAVETYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRK 94 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-17	20	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.12E-15	30	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	35	95	IPR001356	Homeobox domain
SMART	SM00389	9.7E-16	37	99	IPR001356	Homeobox domain
CDD	cd00086	1.62E-12	38	94	No hit	No description
Pfam	PF00046	3.7E-15	40	94	IPR001356	Homeobox domain
SMART	SM00571	1.9E-22	565	624	IPR018501	DDT domain
PROSITE profile	PS50827	16.96	565	624	IPR018501	DDT domain
Pfam	PF02791	1.2E-18	566	621	IPR018501	DDT domain
Pfam	PF05066	2.5E-15	747	815	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	6.6E-8	964	1004	IPR028942	WHIM1 domain
Pfam	PF15613	1.1E-12	1147	1219	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1759 aa Download sequence Send to blast
MEPDSSAAAA AAAAAATAGG GSGSSDVEKK KLPEGEPKVK RKMKTASQLE ILENTYAVET 60 YPSEALRAEL SVKLGLSDRQ LQMWFCHRRL KDRKASTPVK RQKKEASPVA MADEMAVSGE 120 IGKEHASGSG SRVSPLGLVD LQLQQQHHQQ RVAHRPGTAV PRFRTEMPAL KRYYEPPQAI 180 SELRAIAFVE AQLGQPLRED GPILGMEFDP LPPGAFGAPI VAAMQHKPVG RPFEAQIYER 240 PDVNSIKGTT RTLHEYQFLP EQPSIRSDAY EQSVPSHYHS SIEVQSTRTM LSTRRSFMHG 300 SEQVASGYSI PGQIPTLNLL PEGKQGHISP ASAEADAVPR RSLVNIGVEA NYGGQPMTSL 360 ESPFMPRVIH DEERLERKRK SEEARIAREV EAHEKRIRKE LEKQDMLRRK REEQMRKDME 420 RQDRERRKEE ERLLREKLRE EERYQREQRR EMERREKFLL KESIKAEKMR LKEEMRREKE 480 VARLKAANVR ATARRIAKES TELIDDERLE LMELAASKKG LPSILSLDSE NLQNLEAFRD 540 MLIEFPPKSV SLRKPFGVEP WICSEEDVGN LLMVWRFLIT FSDVLRLWPF TLDEFVQAFH 600 DFDPRLLAEI HIALLKLIIK DIEDVARTPA SAVGANPNSG VNPGGGHPEI VEGAYAWGFD 660 IRSWQRHLNA LTWPEILRQF ALSAGFGPKL KKQSVEPAYP RDENEGNDGA DIISNLRSGV 720 AAEKAVAKLQ ERGFSNPRRS RHRLTPGTVK FAAFHILSLE GSKGLNILEV AEKIQKSGLR 780 DLKTSKTPEA SISAALSRDT KLFERTAPST YCLRDPYRKD PADADAILSA AREKIRVFKN 840 ECVNGEEAED VEKEVERDDE SESDAADDPE VDDLVSELKF AETPQSHKTD RTDGMNSTED 900 VSEILRFDLT QTPGDVSLQI STGIMHSESF GELKPIGTSG CQSAAIDADS SNLNQEDAVI 960 DESNAGQKWV QGLTEGEYSD LTVEERLDAL VALIGVANEG NSIRLVLEER LEAASALKKQ 1020 IWAEAQLDKR RFKEEFLLKV QYPSVCNNAE QFCSVTSREA RKSPLLAVDG HSEVAAIRSL 1080 QQEAMHKLPD ESNNSSNVAV EKACPMQEIY GGQDNSQFQH FAYVAEKSRS QLKAYIGHRA 1140 DETFVYRSLP LGQDRRRNRY WQFITSPSRN DPGSGRIFVE LRDGRWRLID SEKDFNALMA 1200 SLDVRGIRES HLHSMLQNIE ATFKETSRRY VYTEAKVSNL VKADTSETVP SNDCCSKTGS 1260 PKSTICISNC ETPEPSTSFL IGIGRNKMEN SDALSRYADL EKWMWEECVN TQFLCARKYG 1320 KMRCETLISI CNNCHDTYFL EDNHCHCCHT TFSLAKTSCF MEHVAQCKDK LEDLFRPLIS 1380 DSAPPLRIRL QRAQLASMEA CIPPEALEPV WSEVYRRSWG LKLHIASAAG DLLQILTLLE 1440 DSIKREYLMS DYETTTELLG AVSNSNLDRM AVLPWVPHTT SAVALRLMEL DSSLCYTQQQ 1500 KADSLKDKES ANFTTLKTNY ADMKRVAGII SAEAPLEYEN LEPDFSVKVG GRHGNSGQGR 1560 NHVRGAHSRV HGGRFQRKIS ASKSESAQRT STKNSGRFDH LPAWKSRDRG KARRKRGRRS 1620 VRNRQKPVKN VENAAVEKVP IPSQQNWKED EETAADQFEA PDNDSDPGTS GTEDDNGQAT 1680 GDDYENLMAD DYGTEPADGD DVDDYEDDHD EEDEEDGLAD ENVQRYFDAE SEEEGNRLMD 1740 GELVENPNKD SESSSEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1759 aa Download sequence Send to blast

MEPDSSAAAA AAAAAATAGG GSGSSDVEKK KLPEGEPKVK RKMKTASQLE ILENTYAVET  60
YPSEALRAEL SVKLGLSDRQ LQMWFCHRRL KDRKASTPVK RQKKEASPVA MADEMAVSGE  120
IGKEHASGSG SRVSPLGLVD LQLQQQHHQQ RVAHRPGTAV PRFRTEMPAL KRYYEPPQAI  180
SELRAIAFVE AQLGQPLRED GPILGMEFDP LPPGAFGAPI VAAMQHKPVG RPFEAQIYER  240
PDVNSIKGTT RTLHEYQFLP EQPSIRSDAY EQSVPSHYHS SIEVQSTRTM LSTRRSFMHG  300
SEQVASGYSI PGQIPTLNLL PEGKQGHISP ASAEADAVPR RSLVNIGVEA NYGGQPMTSL  360
ESPFMPRVIH DEERLERKRK SEEARIAREV EAHEKRIRKE LEKQDMLRRK REEQMRKDME  420
RQDRERRKEE ERLLREKLRE EERYQREQRR EMERREKFLL KESIKAEKMR LKEEMRREKE  480
VARLKAANVR ATARRIAKES TELIDDERLE LMELAASKKG LPSILSLDSE NLQNLEAFRD  540
MLIEFPPKSV SLRKPFGVEP WICSEEDVGN LLMVWRFLIT FSDVLRLWPF TLDEFVQAFH  600
DFDPRLLAEI HIALLKLIIK DIEDVARTPA SAVGANPNSG VNPGGGHPEI VEGAYAWGFD  660
IRSWQRHLNA LTWPEILRQF ALSAGFGPKL KKQSVEPAYP RDENEGNDGA DIISNLRSGV  720
AAEKAVAKLQ ERGFSNPRRS RHRLTPGTVK FAAFHILSLE GSKGLNILEV AEKIQKSGLR  780
DLKTSKTPEA SISAALSRDT KLFERTAPST YCLRDPYRKD PADADAILSA AREKIRVFKN  840
ECVNGEEAED VEKEVERDDE SESDAADDPE VDDLVSELKF AETPQSHKTD RTDGMNSTED  900
VSEILRFDLT QTPGDVSLQI STGIMHSESF GELKPIGTSG CQSAAIDADS SNLNQEDAVI  960
DESNAGQKWV QGLTEGEYSD LTVEERLDAL VALIGVANEG NSIRLVLEER LEAASALKKQ  1020
IWAEAQLDKR RFKEEFLLKV QYPSVCNNAE QFCSVTSREA RKSPLLAVDG HSEVAAIRSL  1080
QQEAMHKLPD ESNNSSNVAV EKACPMQEIY GGQDNSQFQH FAYVAEKSRS QLKAYIGHRA  1140
DETFVYRSLP LGQDRRRNRY WQFITSPSRN DPGSGRIFVE LRDGRWRLID SEKDFNALMA  1200
SLDVRGIRES HLHSMLQNIE ATFKETSRRY VYTEAKVSNL VKADTSETVP SNDCCSKTGS  1260
PKSTICISNC ETPEPSTSFL IGIGRNKMEN SDALSRYADL EKWMWEECVN TQFLCARKYG  1320
KMRCETLISI CNNCHDTYFL EDNHCHCCHT TFSLAKTSCF MEHVAQCKDK LEDLFRPLIS  1380
DSAPPLRIRL QRAQLASMEA CIPPEALEPV WSEVYRRSWG LKLHIASAAG DLLQILTLLE  1440
DSIKREYLMS DYETTTELLG AVSNSNLDRM AVLPWVPHTT SAVALRLMEL DSSLCYTQQQ  1500
KADSLKDKES ANFTTLKTNY ADMKRVAGII SAEAPLEYEN LEPDFSVKVG GRHGNSGQGR  1560
NHVRGAHSRV HGGRFQRKIS ASKSESAQRT STKNSGRFDH LPAWKSRDRG KARRKRGRRS  1620
VRNRQKPVKN VENAAVEKVP IPSQQNWKED EETAADQFEA PDNDSDPGTS GTEDDNGQAT  1680
GDDYENLMAD DYGTEPADGD DVDDYEDDHD EEDEEDGLAD ENVQRYFDAE SEEEGNRLMD  1740
GELVENPNKD SESSSEYSD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009631239.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A1S3XJL7	0.0	A0A1S3XJL7_TOBAC; homeobox-DDT domain protein RLT2-like
STRING	XP_009631239.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator