PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009630856.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 200aa    MW: 22109.6 Da    PI: 4.7811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009630856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.34.5e-142474155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+ Vr ++ +gr++AeIrdp     + ++++lg+f+t e+ a+a++  +++++g
  XP_009630856.1 24 PRYRDVRKRP-WGRFAAEIRDPI----KkTQVWLGTFDTVEDVARAYDDSARAIRG 74
                    67999*****.**********72....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.66E-302484No hitNo description
PfamPF008478.6E-82474IPR001471AP2/ERF domain
SMARTSM003807.9E-302588IPR001471AP2/ERF domain
PROSITE profilePS5103220.6662582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-282583IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-182583IPR016177DNA-binding domain
PRINTSPR003672.0E-82637IPR001471AP2/ERF domain
PRINTSPR003672.0E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
IGDAPSEVNR PGSDILKRPE TDPPRYRDVR KRPWGRFAAE IRDPIKKTQV WLGTFDTVED  60
VARAYDDSAR AIRGPKAKTN FPNLVAITTQ QDNNPYGSNQ FELFPNSRPA SSSMGSTLES  120
SSGPRGSGNK LIRMKISHPV LLPEDCRSDC DSSSSVVDDH CDIDQTSLFL PKQPLPFDLN  180
LSPPSDDIDA DDLHVTDLCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-192682360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A9e-1921831073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630856.11e-145PREDICTED: ethylene-responsive transcription factor 3-like, partial
SwissprotQ9LDE43e-31ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A1S4CKA71e-111A0A1S4CKA7_TOBAC; ethylene-responsive transcription factor 3-like
STRINGXP_009630856.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137791113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-29ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]