PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009630795.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 331aa MW: 37750.8 Da PI: 7.9818 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.9 | 2e-09 | 88 | 112 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f++ GtC+ G+ C+FaHg XP_009630795.1 88 FKTRMCAKFME-GTCRNGEHCTFAHG 112 69*********.*************9 PP | |||||||
2 | zf-CCCH | 25.8 | 1.9e-08 | 148 | 170 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ f+ + +C+yGd+C+F H XP_009630795.1 148 MKICKKFYNGEECPYGDKCNFLH 170 579******66************ PP | |||||||
3 | zf-CCCH | 36.3 | 9.4e-12 | 223 | 249 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C+ + tG+C++ drC+FaHg+ XP_009630795.1 223 WKTKMCSKWETTGQCPFRDRCHFAHGQ 249 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-15 | 84 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.02E-8 | 85 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0015 | 87 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.906 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-6 | 88 | 112 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0027 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.089 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-7 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-9 | 148 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-6 | 148 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-17 | 218 | 254 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-10 | 219 | 254 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.07 | 222 | 250 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-4 | 222 | 249 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 223 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MSYSDPPPPH PPFMPMPFAG GDIGEVWPQS PMNHEFPESY SQFDHAPPFK RLRNSDNNSP 60 NSANYTPTNS RVNQLNLIGN KGTSHIFFKT RMCAKFMEGT CRNGEHCTFA HGVEDLREPP 120 PNWQELVREK DRGVVGNWND DQKIIHRMKI CKKFYNGEEC PYGDKCNFLH ERPPKFKADI 180 PRQRESSAIS IGTTGNRSDA ELNEISKHGI VDSDAVRIKP IYWKTKMCSK WETTGQCPFR 240 DRCHFAHGQS ELQVPSGPDL LMNSLPIMPR PFSVPLVELS SANAVVNASI QEEKEDKKIL 300 KWKLTKKIYR IYADWIDDLV PPHLLASKAD S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630795.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Refseq | XP_009630796.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 2e-76 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A1S3Z582 | 0.0 | A0A1S3Z582_TOBAC; zinc finger CCCH domain-containing protein 39-like | ||||
STRING | XP_009630795.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6553 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-70 | C3H family protein |