PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009630795.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 331aa    MW: 37750.8 Da    PI: 7.9818
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009630795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-0988112126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C  f++ GtC+ G+ C+FaHg
  XP_009630795.1  88 FKTRMCAKFME-GTCRNGEHCTFAHG 112
                     69*********.*************9 PP

2zf-CCCH25.81.9e-08148170325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     +++C+ f+ + +C+yGd+C+F H
  XP_009630795.1 148 MKICKKFYNGEECPYGDKCNFLH 170
                     579******66************ PP

3zf-CCCH36.39.4e-12223249127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+ C+ +  tG+C++ drC+FaHg+
  XP_009630795.1 223 WKTKMCSKWETTGQCPFRDRCHFAHGQ 249
                     8************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.9E-1584120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-885118IPR000571Zinc finger, CCCH-type
SMARTSM003560.001587113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.90687114IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-688112IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027145172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089145173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7145172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-9148171IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6148170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-17218254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-10219254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07222250IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4222249IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6223249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSYSDPPPPH PPFMPMPFAG GDIGEVWPQS PMNHEFPESY SQFDHAPPFK RLRNSDNNSP  60
NSANYTPTNS RVNQLNLIGN KGTSHIFFKT RMCAKFMEGT CRNGEHCTFA HGVEDLREPP  120
PNWQELVREK DRGVVGNWND DQKIIHRMKI CKKFYNGEEC PYGDKCNFLH ERPPKFKADI  180
PRQRESSAIS IGTTGNRSDA ELNEISKHGI VDSDAVRIKP IYWKTKMCSK WETTGQCPFR  240
DRCHFAHGQS ELQVPSGPDL LMNSLPIMPR PFSVPLVELS SANAVVNASI QEEKEDKKIL  300
KWKLTKKIYR IYADWIDDLV PPHLLASKAD S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630795.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_009630796.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT812e-76C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A1S3Z5820.0A0A1S3Z582_TOBAC; zinc finger CCCH domain-containing protein 39-like
STRINGXP_009630795.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-70C3H family protein