PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009630765.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 446aa    MW: 49326.3 Da    PI: 8.302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009630765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.4e-16238284455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ ErrRRdriN+++ +L++l+P+a      K +Ka++L ++++Y+k+Lq
  XP_009630765.1 238 VHNQSERRRRDRINQKMKTLQRLVPNA-----SKTDKASMLDEVINYLKQLQ 284
                     6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.98E-16228288No hitNo description
PROSITE profilePS5088817.752234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-19237307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-14238284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-18239300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-17240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSHCTVPTWN PRHQRQEQAV EAEEPNKYPH VHNQQNQINH FMPMSKCEKV AELTWENPQI  60
GMQGVGGILS MSQTKPTILG RAGDTLESIV HQATYHGQNQ TSIQNYGQNQ NLKFGMCVGK  120
WGESSQHQMA PPPSTRTGGA TVLAKKRMRS ESYGGNLVGE DEYEERSACA SASATFCREN  180
DTTMVTWPSF DESSRSIKSK TTCDEDSACH DGGSQENKEE EHETKGSNSS RRSRAAVVHN  240
QSERRRRDRI NQKMKTLQRL VPNASKTDKA SMLDEVINYL KQLQAQVQLM SSARNMAPQM  300
MMPLGMHQHI QMSLLARMGM GVGLGMGMGM FDMTALARAA APHQSLTTHY PIHTNPIANP  360
TNPFIPPAFA MPTAPAIPSA AQANTVGRAT TAVTPAPYSA FLTQSMDTEY FNNMAALYRQ  420
QANNHSTQTT DSKLNQGNLN IQGQRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385682e-69AC238568.1 Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence.
GenBankHG9755152e-69HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630765.10.0PREDICTED: transcription factor UNE10-like isoform X1
TrEMBLA0A1S3ZJW50.0A0A1S3ZJW5_TOBAC; transcription factor UNE10-like isoform X1
STRINGXP_009630765.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-36bHLH family protein