PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009630762.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 178aa MW: 20115.8 Da PI: 6.4953

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009630762.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.3	2.2e-42	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++pe++red+++slvyeAe+r+rdPvyG++g i +lq+++++l+++l XP_009630762.1 11 SCAACKFLKRRCSPNCQFAPYFRSDEPKKFANVHKVFGASNVSKILNEVPEDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMAELQHDLM 105 6********************************************************************************************99 PP DUF260 96 llke 99 l+++ XP_009630762.1 106 LART 109 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.756	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-41	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKSHEPRSSS SCAACKFLKR RCSPNCQFAP YFRSDEPKKF ANVHKVFGAS NVSKILNEVP 60 EDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMAEL QHDLMLARTR LAYFATKQNP 120 TTNCSLMLDY DPFNVANMMP SDFVDVPITA GYLDSYAQNS FDMDHCASTN EFGQFPFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-47	6	118	6	118	LOB family transfactor Ramosa2.1
5ly0_B	2e-47	6	118	6	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630762.1	1e-132	PREDICTED: LOB domain-containing protein 21-like
Refseq	XP_016495126.1	1e-132	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	2e-61	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1S4C1U5	1e-131	A0A1S4C1U5_TOBAC; LOB domain-containing protein 21-like
STRING	XP_009630762.1	1e-132	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	6e-64	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]