PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009630729.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 326aa    MW: 37198.7 Da    PI: 6.0663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009630729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183887255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr++  +g+WvAeIr+p   + r +r++lg+f t  eAa+a++ a+++l+g
  XP_009630729.1 38 TFRGVRQRT-WGKWVAEIREP---N-RgARIWLGTFNTSLEAARAYDDAARRLYG 87
                    69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.44E-173797No hitNo description
PROSITE profilePS5103221.1143895IPR001471AP2/ERF domain
SMARTSM003801.2E-3338101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-293896IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-203895IPR016177DNA-binding domain
PfamPF008476.4E-133987IPR001471AP2/ERF domain
PRINTSPR003671.7E-93950IPR001471AP2/ERF domain
PRINTSPR003671.7E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAESVDTNNS PISKKSTVGR SRKGCMRGKG GPENALCTFR GVRQRTWGKW VAEIREPNRG  60
ARIWLGTFNT SLEAARAYDD AARRLYGSGA KLNLSESEQP SNENFNSGEN CIIGSGNGNE  120
SSGECSVLEE ASIFKDGNGK YLVWENPAPS LLDEQLSTGF NWSTNEAEDN TNFSFEEKEF  180
YDDYFSPKDF LFHVFDTYSR QNERTVYTLV LLPESHNCSN PLLVSLGKWA LILPLFFDLI  240
LQRFHFSPWI YTLCYDQITD LLFNFKESRV LMKIQRRMGN VIFPIEAHLQ KLASESAFSV  300
TISNWRSYTF ISGGHPRDFR FIQRLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-163994359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432636.11e-140PREDICTED: dehydration-responsive element-binding protein 2G-like
RefseqXP_018621869.11e-140PREDICTED: dehydration-responsive element-binding protein 2G-like
TrEMBLA0A1S3WYM81e-139A0A1S3WYM8_TOBAC; dehydration-responsive element-binding protein 2G-like
STRINGXP_009630729.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.17e-38ERF family protein