PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009630285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 111aa MW: 12605.7 Da PI: 10.7428 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 5 | 55 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+Wv+eIr+p +r++lg+f+taeeAaka+++a+ + g XP_009630285.1 5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFDTAEEAAKAYDQAAILMSG 55 59*******9.**********8.....334*********************987765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.59E-35 | 5 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-33 | 6 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-21 | 6 | 64 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.0E-39 | 6 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-13 | 6 | 53 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.694 | 6 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 111 aa Download sequence Send to blast |
MVHSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFDTAE EAAKAYDQAA ILMSGRSAKT 60 NFPITQDTDN KELKAKDQEF SSIPCPKALS KILHAKLRKC SKVPSPSLTC L |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-18 | 6 | 63 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594389.1 | 3e-74 | PREDICTED: ethylene-responsive transcription factor WIN1-like | ||||
Refseq | XP_016503157.1 | 3e-74 | PREDICTED: ethylene-responsive transcription factor WIN1-like | ||||
Swissprot | Q3E958 | 1e-48 | SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | A0A1S4CPH2 | 7e-73 | A0A1S4CPH2_TOBAC; ethylene-responsive transcription factor WIN1-like | ||||
STRING | XP_009630285.1 | 7e-78 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1352 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25390.2 | 1e-41 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|