PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009630248.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 178aa MW: 20000.6 Da PI: 5.6855

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009630248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7.4e-42	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++pe++r+d+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l XP_009630248.1 11 SCAACKLLKRRCTPNCQFAPYFRSDEPKKFANVHKVFGASNVSKILNDVPEDQRDDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMVELQHDLM 105 6*********************************************************************************************9 PP DUF260 96 llkee 100 l++++ XP_009630248.1 106 LAQTR 110 98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.492	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.9E-41	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKSNEPRSSS SCAACKLLKR RCTPNCQFAP YFRSDEPKKF ANVHKVFGAS NVSKILNDVP 60 EDQRDDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVEL QHDLMLAQTR LAYFAAKQNP 120 TTNCSLMLDY DPFNVANMMP SDFVDVPVTA GYLDSYAQNS FDMDHCASTN EFGQFPFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-46	6	115	6	115	LOB family transfactor Ramosa2.1
5ly0_B	8e-46	6	115	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630248.1	1e-132	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	1e-60	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1S3XT80	1e-130	A0A1S3XT80_TOBAC; LOB domain-containing protein 21-like
STRING	XP_009630248.1	1e-131	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	5e-63	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]