PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009630231.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 228aa MW: 26116.4 Da PI: 9.1507 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.5 | 2.4e-32 | 151 | 209 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ XP_009630231.1 151 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 209 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-33 | 136 | 209 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 144 | 209 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.356 | 146 | 211 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-37 | 151 | 210 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-25 | 152 | 208 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MFSQSLFEDQ ADMSSQLGFF TFPPNYNNNM GSAITTTTLP FGICNHKTLT IIPPSFAADN 60 NSLIESTALR QKEDLTTSIF GGPHLLSLQK STANTWAWGE VNESNNIKRS RDNIDDHLGV 120 SAIKMKKMKS SRRKVREPRF CFKTLSDVDV LDDGYKWRKY GQKVVKNTQH PRSYYRCTQD 180 NCRVKKRVER LAEDPRMVIT TYEGRHVHSP SLDEEDSQAS SQLNNLLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-27 | 142 | 208 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 5e-27 | 142 | 208 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 7e-68 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630231.1 | 1e-173 | PREDICTED: probable WRKY transcription factor 13 isoform X2 | ||||
Refseq | XP_016480880.1 | 1e-173 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_018634566.1 | 1e-173 | PREDICTED: probable WRKY transcription factor 13 isoform X3 | ||||
TrEMBL | A0A1S4AW95 | 1e-172 | A0A1S4AW95_TOBAC; probable WRKY transcription factor 13 | ||||
STRING | XP_009630231.1 | 1e-173 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10376 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 7e-53 | WRKY DNA-binding protein 13 |