PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009630227.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 24556.1 Da PI: 8.8487 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.4 | 1.4e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl+yeA r+ +Pv+G+vg++++++++++q+ XP_009630227.1 2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATIFVAKFFGRAGLMSFISAVPRNQRPGLFQSLLYEAAGRTVNPVNGVVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 +++++l+ XP_009630227.1 97 AVDTVLR 103 9998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.457 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-25 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATIFVA KFFGRAGLMS FISAVPRNQR 60 PGLFQSLLYE AAGRTVNPVN GVVGLLWTGN WHVCQAAVDT VLRGGTLSPI PELFGKSAEV 120 DEESECTNVF KLQNHTQNTR SKMQKRCRSS DEAAAKVLQL ENLDLSLLTR GFQSEIVHSS 180 LPEKRRSRTP SRKSEVSVTS TCFDSSLGDH QGKQLRLLSL FT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630227.1 | 1e-164 | PREDICTED: LOB domain-containing protein 37-like isoform X1 | ||||
Swissprot | Q9FN11 | 2e-75 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A1S4CED5 | 1e-160 | A0A1S4CED5_TOBAC; LOB domain-containing protein 37-like | ||||
STRING | XP_009630227.1 | 1e-164 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-77 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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