PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009629629.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 313aa MW: 35571 Da PI: 6.8975

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009629629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.8	1.1e-35	21	142	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.eaesssssa 82 +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++ s ss ++ ++++++++ XP_009629629.1 21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpstidaadgS-SSGNNIvLEQQQQQQQ 114 79**************************************************************98888766655532.2222222333333333 PP TCP 83 snsssg.....................k 89 +++ ++ + XP_009629629.1 115 EFQLQRqleennpsggnscnsymmqthS 142 3111113333344444333333333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.4E-32	21	126	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.785	23	81	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MKRATGGEIV QVEGGHILRS TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY 60 DRPSKAVDWL IKKAKNAIDK LDELPPWNPS TIDAADGSSS GNNIVLEQQQ QQQQEFQLQR 120 QLEENNPSGG NSCNSYMMQT HSTGGETQSL GDTMKSFFPM NSETSLMNFQ NYPHEIMPRS 180 ASFQNEDLGL SLHSTTFHDQ NSNHRASSSH DHQTIFSSQN FETNYSRMAG WILPHHQQTL 240 YSPQPQGAVF PQREPLQSNF SQLIHAWEER PPMNHVHHQA EISNRHFTSD FQIPARIHGE 300 HEEPSSASPN SHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-23	28	81	1	54	Putative transcription factor PCF6
5zkt_B	6e-23	28	81	1	54	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629629.1	0.0	PREDICTED: transcription factor TCP4-like
TrEMBL	A0A1S4C4S3	0.0	A0A1S4C4S3_TOBAC; transcription factor TCP4-like
STRING	XP_009629629.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6607	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	4e-55	TCP family protein