PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009629622.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 369aa    MW: 40442.8 Da    PI: 6.0606
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009629622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.7e-0893117126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC+ f++ G C+y  +C+FaHg
  XP_009629622.1  93 YKTKLCCKFRA-GVCPYITNCNFAHG 117
                     9**********.*************8 PP
2zf-CCCH18.63.3e-06178198626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ f+    C+yGd+C+F H+
  XP_009629622.1 178 CKKFYTEEGCPYGDSCTFLHD 198
                     99999999************7 PP
3zf-CCCH44.23.1e-14232257126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_009629622.1 232 WKTRICNKWETTGYCPFGSKCHFAHG 257
                     8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-889123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-1590125IPR000571Zinc finger, CCCH-type
SMARTSM003560.004892118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.81292119IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-593117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328172200IPR000571Zinc finger, CCCH-type
SMARTSM003560.85172199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7173200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-8174200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-10228261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-17228260IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-9231258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422231259IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-11232257IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDFMGEAGFA VGNMIQDSAA SSGGFGSWGP NFSDQAVWAT EDDYRAWNSN ETSSNSQNRS  60
GSEPPNKKSR NVQGLDPRDI VTSSSKAIGK MFYKTKLCCK FRAGVCPYIT NCNFAHGIEE  120
LRKPPPNWQD IVAAHESERG GGAGGVLAVE PREEHQIPIL TSPDLRGESQ RSAKGRHCKK  180
FYTEEGCPYG DSCTFLHDEQ SRARESVAIS VTPTVGGFGN NATGTTLKPS NWKTRICNKW  240
ETTGYCPFGS KCHFAHGVAE IDEGDEPSDI PLEMRELNRF GGGPVETEGK DSLFVPPDLK  300
QAGSSFKTTE STVPSTISAL HTDVYHLGQG VQVQRPSSIV ERPGQRFFQK WKGPDKISKI  360
YGDWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0140730.0BT014073.1 Lycopersicon esculentum clone 133173F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629622.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like isoform X1
SwissprotQ9LQM31e-118C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1S4B6N80.0A0A1S4B6N8_TOBAC; zinc finger CCCH domain-containing protein 12-like
TrEMBLA0A1U7VMQ80.0A0A1U7VMQ8_NICSY; zinc finger CCCH domain-containing protein 12-like
STRINGXP_009629622.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-119C3H family protein