PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009629592.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 730aa MW: 80583.7 Da PI: 7.9723

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009629592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.3e-09	440	477	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_009629592.1 440 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 477 554459******************************88 PP
2	BELL	119.7	1.3e-38	301	372	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+s+l+eV++rY+qy++q+q++++sFe++ag+gsak+Yt+lAl++iS++FrcLkdai++qi XP_009629592.1 301 QRQELQMKKAKLISMLDEVEQRYRQYHHQMQIIVASFEEAAGIGSAKSYTQLALHTISKQFRCLKDAITGQI 372 69*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.7E-57	222	370	IPR006563	POX domain
Pfam	PF07526	5.2E-47	229	369	IPR006563	POX domain
PROSITE profile	PS50071	12.05	418	481	IPR001356	Homeobox domain
CDD	cd00086	4.89E-12	421	482	No hit	No description
SMART	SM00389	4.2E-10	421	485	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-17	422	487	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-29	424	487	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	438	477	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MAMYYQGSSE IQADGLQTLY LMNPNYIGYT DTQQQQQQHL QQANMFFLNS ATAGNLAHGP 60 LPSQAHTQHF VGVPLPTSFH DPSRPSVHDV SASHHGLLQR LWSSDVQNSG GGGGGGGRNE 120 SQSHIPTAVV SPNSGGGTTT DFASQLGFQR PGLVSPTQQH QGLSLSLSPQ QQQQQQMNFR 180 SFPLDHHEIS PHTNHQVGIL SSSSPRTNTN NNHIRGSGAS SSSFSNGMIV GSKYLKAAQE 240 LLDEVVNVGK NIKEVGAKEK DKLLDNELMP LSSDVAAAAP TSGSGETSSQ KNSVAELTTV 300 QRQELQMKKA KLISMLDEVE QRYRQYHHQM QIIVASFEEA AGIGSAKSYT QLALHTISKQ 360 FRCLKDAITG QIKATSKSLG EEDISLGGKI EGSSSRLRYV DHHLRQQRAL QQLGMMQPNA 420 WRPQRGLPER AVSVLRAWLF EHFLHPYPKD SDKIMLAKQT GLTRSQVSNW FINARVRLWK 480 PMVEEMYLEE VKNNQEQNGL EENANNIEPN KEMRTKSSSP QETTNLRKDK QISSILQDAS 540 PTEISCSTIS TSPTAGSLPA QAAGFSFIGS LNMENSTSER NNKKPRNDMQ NSSSSILSME 600 TEMKAGNTRK GEKFNGDNRQ ARDQSYPLMT AYSTMGEFGR FNPEQQMATR FQGNGVSLTL 660 GLPPSENLVL SGNQHNFLPN QNIGIEMGRI ETHYNRMTNP QPSHPSITYE NIDFQSGKRY 720 AAQLLPDFVS

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MAMYYQGSSE IQADGLQTLY LMNPNYIGYT DTQQQQQQHL QQANMFFLNS ATAGNLAHGP  60
LPSQAHTQHF VGVPLPTSFH DPSRPSVHDV SASHHGLLQR LWSSDVQNSG GGGGGGGRNE  120
SQSHIPTAVV SPNSGGGTTT DFASQLGFQR PGLVSPTQQH QGLSLSLSPQ QQQQQQMNFR  180
SFPLDHHEIS PHTNHQVGIL SSSSPRTNTN NNHIRGSGAS SSSFSNGMIV GSKYLKAAQE  240
LLDEVVNVGK NIKEVGAKEK DKLLDNELMP LSSDVAAAAP TSGSGETSSQ KNSVAELTTV  300
QRQELQMKKA KLISMLDEVE QRYRQYHHQM QIIVASFEEA AGIGSAKSYT QLALHTISKQ  360
FRCLKDAITG QIKATSKSLG EEDISLGGKI EGSSSRLRYV DHHLRQQRAL QQLGMMQPNA  420
WRPQRGLPER AVSVLRAWLF EHFLHPYPKD SDKIMLAKQT GLTRSQVSNW FINARVRLWK  480
PMVEEMYLEE VKNNQEQNGL EENANNIEPN KEMRTKSSSP QETTNLRKDK QISSILQDAS  540
PTEISCSTIS TSPTAGSLPA QAAGFSFIGS LNMENSTSER NNKKPRNDMQ NSSSSILSME  600
TEMKAGNTRK GEKFNGDNRQ ARDQSYPLMT AYSTMGEFGR FNPEQQMATR FQGNGVSLTL  660
GLPPSENLVL SGNQHNFLPN QNIGIEMGRI ETHYNRMTNP QPSHPSITYE NIDFQSGKRY  720
AAQLLPDFVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	427	485	5	63	Homeobox protein Meis2
3k2a_B	5e-16	427	485	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629592.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
TrEMBL	A0A1S3X9F7	0.0	A0A1S3X9F7_TOBAC; BEL1-like homeodomain protein 1
STRING	XP_009629592.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-108	BEL1-like homeodomain 1