PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009629524.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 391aa    MW: 44539.1 Da    PI: 6.7803
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009629524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62e-52141421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLp + ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s
  XP_009629524.1  14 MLPGFRFHPTDEELVGFYLRRKVQQKPISI-ELIKQLDIYKYDPWDLPtELATVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYS 107
                     579***************************.89***************555566999************************************** PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  XP_009629524.1 108 SeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142
                     956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-5612173IPR003441NAC domain
PROSITE profilePS5100557.24414173IPR003441NAC domain
PfamPF023651.3E-2516142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEERNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQQKP ISIELIKQLD IYKYDPWDLP  60
TELATVGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSITDSTA PKRFLDKHIP PNDSWAICRI FKKANSNTHR  180
SLSHSWVSPT VPENTTSDFL TSSHFTNYSN EISLINKTSS PIQFSGCSIN DLQNSSSNMT  240
SFSTLDLPLY KSLNSNYDPI TSYTFSSCTE TSEILPLPKC INMSNNNIDA SSLLLNMSSS  300
IFGDYSIPLP ENIEGGGVHD QETTLKEANH VNNMDHMEEQ WRNVRSIGLL PLNNFPLNMA  360
ADAWKTNLLW DSSPCPSSEI ATSYSTNKCY T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-531617619168NO APICAL MERISTEM PROTEIN
1ut4_B6e-531617619168NO APICAL MERISTEM PROTEIN
1ut7_A6e-531617619168NO APICAL MERISTEM PROTEIN
1ut7_B6e-531617619168NO APICAL MERISTEM PROTEIN
3swm_A7e-531617622171NAC domain-containing protein 19
3swm_B7e-531617622171NAC domain-containing protein 19
3swm_C7e-531617622171NAC domain-containing protein 19
3swm_D7e-531617622171NAC domain-containing protein 19
3swp_A7e-531617622171NAC domain-containing protein 19
3swp_B7e-531617622171NAC domain-containing protein 19
3swp_C7e-531617622171NAC domain-containing protein 19
3swp_D7e-531617622171NAC domain-containing protein 19
4dul_A6e-531617619168NAC domain-containing protein 19
4dul_B6e-531617619168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492881e-110AC149288.1 Solanum demissum chromosome 5 clone PGEC446J10, complete sequence.
GenBankEF5142121e-110EF514212.1 Solanum tuberosum strain P6/210 contig R1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629524.10.0PREDICTED: putative NAC domain-containing protein 94 isoform X1
SwissprotQ9ZVH01e-107FEZ_ARATH; Protein FEZ
TrEMBLA0A1S3YUQ10.0A0A1S3YUQ1_TOBAC; protein FEZ-like isoform X1
STRINGXP_009629524.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-110NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]