PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009629334.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 319aa MW: 36656.8 Da PI: 8.0765

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009629334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.2	1.6e-53	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePw+L++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + XP_009629334.1 7 VPPGFRFHPTDEELLHYYLKKKLSFQKFDM-EVIREVDLNKIEPWELQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI 100 69**************************.99**********964444222455********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++g++ktLvfy+grap+g+ktdW+mheyrle XP_009629334.1 101 RN-TLKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 136 9.9999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-59	5	155	IPR003441	NAC domain
PROSITE profile	PS51005	58.054	7	155	IPR003441	NAC domain
Pfam	PF02365	6.8E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MASSGGVPPG FRFHPTDEEL LHYYLKKKLS FQKFDMEVIR EVDLNKIEPW ELQERCKIGS 60 TPQNEWYFFS HKDRKYPTGS RTNRATNAGF WKATGRDKCI RNTLKKIGMR KTLVFYRGRA 120 PHGQKTDWIM HEYRLEDSDE NSSEDGWVIC RVFKKKNLFK VIGNNNEGSA ASSDLLNNTS 180 IHQPRTNFTH KDSPYLLQHQ QHGHDHGLNY SHIPTAVAAT FPHEYNSHNN NIQLAQNFMS 240 LGYHHPQDFS SGPLPTSQQS APCESGLEVA SSHQNMNNDQ WGMINDRLVE DANVASSSSM 300 NQINHLPLRG EMDFWSYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	7	157	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	7	157	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	7	157	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	7	157	17	167	NO APICAL MERISTEM PROTEIN
4dul_A	2e-52	7	157	17	167	NAC domain-containing protein 19
4dul_B	2e-52	7	157	17	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629334.1	0.0	PREDICTED: protein BEARSKIN2-like
Swissprot	Q9SV87	1e-122	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A314KKI0	0.0	A0A314KKI0_NICAT; Protein bearskin2
STRING	XP_009629334.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-114	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]