PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009629285.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 882aa MW: 99031.5 Da PI: 8.8802

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009629285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.5e-06	180	200	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+f + G C++G+ C+F H+ XP_009629285.1 180 VCRNFTA-GNCRRGSDCRFFHP 200 6****.*********998 PP
2	zf-CCCH	19.4	1.9e-06	262	285	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +t +Cr+f + G C+ G++C+F+H+ XP_009629285.1 262 GTIICRDFVK-GNCRWGASCRFSHD 285 5779****.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.15	175	202	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.8E-5	177	201	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-5	178	199	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.32	181	200	No hit	No description
Gene3D	G3DSA:4.10.1000.10	3.0E-6	255	285	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-5	260	285	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.9E-5	260	286	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.713	260	287	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.54	265	284	No hit	No description
SMART	SM00356	0.59	311	336	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.061	311	337	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.013	317	334	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MGESAKRRKS LWDAEETPNS PDYEEWGASK ADNSWQSKNN SGWSCGDNVT GTEELRKENY 60 HYKSMSPAFD RWGMRSNSHS PNNGRTQSRR YPGRSRSRSR SRSRSRARGE GRSRSRSRGR 120 DRFRGWTRSR SRSKSRDRDR DRDRGSMRVQ NRSRSPLHNS KRDPYASGDR RSGPRMSSQV 180 CRNFTAGNCR RGSDCRFFHP DAINHRDGGH SEGNLAERLG SRPERGHVSR YADSEGPGYQ 240 SRDRLPDMHH LEDEMHRNRN RGTIICRDFV KGNCRWGASC RFSHDGASGD SYDKGTRSAS 300 FDHGQDNQAS RSGKSLCKYF AAGKCYKDNC KFSHDATSRN HEIRPSDDIG GHRLDDKNNW 360 LKGPKWDDEG RPSDLVKATG WDEGRPSDHV KSSGWDEGRP SDHVKSSGWD ESVVRKDTAV 420 TVLTDRTNER LDHSFENESR AWGSTEPHYM NSDRERGVSP HGGNAGNLND LNISESSVMQ 480 KLTNAQAIHL TSQASDQNME RTSAHVLGHN SNPEASGIIL SATANQPYGS ASSYIQPQGL 540 TEDSIARTLG SNALNEFMHA RDGLHQVHLP GQSFSGTGIG MSSEHSAALN GTHQEPNVFL 600 PIPSTGHNKR EAPSTPEMLE FKFPQNISCT VTGEQVHQMK TSPTSMIKKF EEELREAQLQ 660 RVLNPSDPSG MLASHPISSL VNAIYGQTNP EMRGPNNYHP ADGVDNFKMP PDNSSYLDRE 720 SNKVPVEQMN QSSTIDPEPG NNDQIDEVKQ QENKLVEVNG KDKLAPEESK DGQENDHPGD 780 MNMHGKVEEG SGNKDEKAMR LFKNALIEFV KEILKPTWKE GKMSREVHKT VVKKVVDKVT 840 STTQGEHVPK TQEKIEQYLS YSKAKITKLV QAYVERLLKN EA

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MGESAKRRKS LWDAEETPNS PDYEEWGASK ADNSWQSKNN SGWSCGDNVT GTEELRKENY  60
HYKSMSPAFD RWGMRSNSHS PNNGRTQSRR YPGRSRSRSR SRSRSRARGE GRSRSRSRGR  120
DRFRGWTRSR SRSKSRDRDR DRDRGSMRVQ NRSRSPLHNS KRDPYASGDR RSGPRMSSQV  180
CRNFTAGNCR RGSDCRFFHP DAINHRDGGH SEGNLAERLG SRPERGHVSR YADSEGPGYQ  240
SRDRLPDMHH LEDEMHRNRN RGTIICRDFV KGNCRWGASC RFSHDGASGD SYDKGTRSAS  300
FDHGQDNQAS RSGKSLCKYF AAGKCYKDNC KFSHDATSRN HEIRPSDDIG GHRLDDKNNW  360
LKGPKWDDEG RPSDLVKATG WDEGRPSDHV KSSGWDEGRP SDHVKSSGWD ESVVRKDTAV  420
TVLTDRTNER LDHSFENESR AWGSTEPHYM NSDRERGVSP HGGNAGNLND LNISESSVMQ  480
KLTNAQAIHL TSQASDQNME RTSAHVLGHN SNPEASGIIL SATANQPYGS ASSYIQPQGL  540
TEDSIARTLG SNALNEFMHA RDGLHQVHLP GQSFSGTGIG MSSEHSAALN GTHQEPNVFL  600
PIPSTGHNKR EAPSTPEMLE FKFPQNISCT VTGEQVHQMK TSPTSMIKKF EEELREAQLQ  660
RVLNPSDPSG MLASHPISSL VNAIYGQTNP EMRGPNNYHP ADGVDNFKMP PDNSSYLDRE  720
SNKVPVEQMN QSSTIDPEPG NNDQIDEVKQ QENKLVEVNG KDKLAPEESK DGQENDHPGD  780
MNMHGKVEEG SGNKDEKAMR LFKNALIEFV KEILKPTWKE GKMSREVHKT VVKKVVDKVT  840
STTQGEHVPK TQEKIEQYLS YSKAKITKLV QAYVERLLKN EA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	119	RSRSRSRGR
2	113	123	RSRSRGRDRFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629285.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 55 isoform X1
Refseq	XP_009629286.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 55 isoform X1
TrEMBL	A0A1J6L7U3	0.0	A0A1J6L7U3_NICAT; Zinc finger ccch domain-containing protein 55
STRING	XP_009629285.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5255	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-13	C3H family protein