PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628988.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 445aa    MW: 49739.5 Da    PI: 8.8234
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-057294123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  XP_009628988.1 72 FICEVCNKGFQREQNLQLHRRGH 94
                    89*******************88 PP
2zf-C2H212.30.00051150172123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_009628988.1 150 WKCDKCSKKYAVQSDWKAHSKTC 172
                     58*****************9998 PP
3zf-C2H210.60.0018180198523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg+ Fsr++++++H   +
  XP_009628988.1 180 DCGTIFSRRDSFVTHRAFC 198
                     8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.7E-67194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.8E-87194No hitNo description
SMARTSM003550.00527294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997294IPR007087Zinc finger, C2H2
PfamPF121712.1E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM0035588115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-5138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.8E-8145170No hitNo description
SMARTSM00355150150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MSNISSGNSS TAGAEEEYEE QDQQQTSNVL PSSVHQEQDL PNKKRRKLPG NPDPSSEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTSSDEIK KRRVYICPEP  120
TCIHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKKYA VQSDWKAHSK TCGTKEYKCD  180
CGTIFSRRDS FVTHRAFCDA LTEENNKVNQ SIASTTGPSH TQVSELMSNS MLNLPEIRNS  240
NMKVPLKPSP HKLNIQTPTG PLLNMAGSMF TSPRNLTSSS FSGFQLSKNS SNMSSSATAL  300
LQQAAQMGAT VSSSINSSPI MVQKGYPSLF QSDHDHQTQI GSSVHGFFGS VSQNGTQETL  360
ISELLNSNRS TTGDHHQMTS RMQNQGWYNG LFNETKINGE SGNDSLTLDF LGIGGMRQRN  420
SHEMHQQQQE MSFEQQKEMS SMWDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35146209366Zinc finger protein JACKDAW
5b3h_F9e-35146209366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14246KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1937771e-125AC193777.1 Solanum lycopersicum chromosome 1 clone C01HBa0051C14, complete sequence.
GenBankHG9755131e-125HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628988.10.0PREDICTED: protein indeterminate-domain 2-like
RefseqXP_016515957.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-110IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1S4DRB60.0A0A1S4DRB6_TOBAC; protein indeterminate-domain 2-like
STRINGXP_009628988.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-95indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]