PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 245aa MW: 27776.9 Da PI: 5.3939 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.7 | 1.6e-30 | 53 | 111 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s+ gC++kk+vers++d ++++itY+++Hnh+ XP_009628910.1 53 SDCWSWRKYGQKPIKGSPYPRGYYKCSSSkGCSAKKQVERSSTDSSLFIITYTSTHNHP 111 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-31 | 43 | 113 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.25 | 47 | 113 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-25 | 50 | 113 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-35 | 52 | 112 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 54 | 111 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGKSRPPKSE SKTSRLLEPE FVAPKKRKMT QKVVITVQME ANAIKQKNEG APSDCWSWRK 60 YGQKPIKGSP YPRGYYKCSS SKGCSAKKQV ERSSTDSSLF IITYTSTHNH PGPNFPNKDT 120 DPVTQDTAMT LQQDQEPITD RHMSLEDNDD DSQSFHYSKS PFNSTTSISQ GIHVQQEENQ 180 FTDKFLGTIS YDDFLPLSYP QLMKFPKSEL SEENDFYDEL GELQLPPSFT SFAGIFEETI 240 LVDPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-21 | 53 | 113 | 17 | 79 | Disease resistance protein RRS1 |
5w3x_D | 5e-21 | 53 | 113 | 17 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 3e-70 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628910.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 isoform X4 | ||||
Refseq | XP_016470170.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 isoform X2 | ||||
TrEMBL | A0A1S4A0Q0 | 0.0 | A0A1S4A0Q0_TOBAC; probable WRKY transcription factor 35 isoform X2 | ||||
STRING | XP_009628909.1 | 1e-180 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 6e-23 | WRKY DNA-binding protein 35 |