PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628909.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 251aa    MW: 28483.6 Da    PI: 5.3836
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.71.8e-2653117259
                     --SS-EEEEEEE--TT-SS-......EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefp......rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++p      r+YY+C+s+ gC++kk+vers++d ++++itY+++Hnh+
  XP_009628909.1  53 SDCWSWRKYGQKPIKGSPYPsdhfgyRGYYKCSSSkGCSAKKQVERSSTDSSLFIITYTSTHNHP 117
                     699****************99999999******998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-2843119IPR003657WRKY domain
PROSITE profilePS5081127.46247119IPR003657WRKY domain
SuperFamilySSF1182902.35E-2250119IPR003657WRKY domain
SMARTSM007741.2E-2952118IPR003657WRKY domain
PfamPF031064.1E-2154117IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGKSRPPKSE SKTSRLLEPE FVAPKKRKMT QKVVITVQME ANAIKQKNEG APSDCWSWRK  60
YGQKPIKGSP YPSDHFGYRG YYKCSSSKGC SAKKQVERSS TDSSLFIITY TSTHNHPGPN  120
FPNKDTDPVT QDTAMTLQQD QEPITDRHMS LEDNDDDSQS FHYSKSPFNS TTSISQGIHV  180
QQEENQFTDK FLGTISYDDF LPLSYPQLMK FPKSELSEEN DFYDELGELQ LPPSFTSFAG  240
IFEETILVDP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-18531191779Disease resistance protein RRS1
5w3x_D2e-18531191779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754403e-70HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628909.10.0PREDICTED: probable WRKY transcription factor 35 isoform X3
RefseqXP_016470169.10.0PREDICTED: probable WRKY transcription factor 35 isoform X1
TrEMBLA0A1S4A0N90.0A0A1S4A0N9_TOBAC; probable WRKY transcription factor 35 isoform X1
STRINGXP_009628909.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112812025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-20WRKY DNA-binding protein 35