PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009628715.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 700aa MW: 76631.2 Da PI: 7.012

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009628715.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.2	3.1e-09	387	424	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp +++ LAk++gLt +qV++WF N R + XP_009628715.1 387 FEHflHPYPRDSDKMMLAKQTGLTRSQVSNWFINARVR 424 554459******************************88 PP
2	BELL	113.2	1.4e-36	251	322	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY++y++q+q vis e++ag+gsak Yt+lAlk+iS++FrcLkdai++qi XP_009628715.1 251 ERQEIQMKKAKLVNMLDEVEQRYRHYHQQMQSVISWLEQAAGIGSAKTYTALALKTISKQFRCLKDAITGQI 322 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.8E-58	173	320	IPR006563	POX domain
Pfam	PF07526	6.7E-47	182	319	IPR006563	POX domain
PROSITE profile	PS50071	12.115	365	428	IPR001356	Homeobox domain
CDD	cd00086	5.04E-12	368	429	No hit	No description
SMART	SM00389	1.3E-9	368	432	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-17	369	434	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	371	434	IPR009057	Homeodomain-like
Pfam	PF05920	7.3E-18	385	424	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MAAYFDGNSE IQGGNDGLQT LILMNPAGYV GFSETQQPPA GGSNLVFFNS NPLGNSLNLP 60 HARPSSQQQQ FVGIPLATSV FTAPSSFPDG TTTPTVHSQH DISALHGFLA RSHEYGFYNP 120 SNDIMEAREV TRAQQQGLSL SLSSQQPGFG NFRPEREELV TTVSPTAGGG SSSSVQSVPL 180 SPKYLKAAQE LLDEVVNVGK AVKTSTTTED VNYSQKSKNN GESSGNMATA AGQEGGETNS 240 KRDGPELSAA ERQEIQMKKA KLVNMLDEVE QRYRHYHQQM QSVISWLEQA AGIGSAKTYT 300 ALALKTISKQ FRCLKDAITG QIRSASKTLG EDDSFGGKIE GSRLKFVDNQ IRQQRALQQL 360 GMIQHNAWRP QRGLPERAVS VLRAWLFEHF LHPYPRDSDK MMLAKQTGLT RSQVSNWFIN 420 ARVRLWKPMV EEMYLEEIKE QEQNGSDLEK TSKLGEQNED STSRSIGPQE KSPRSDSQNK 480 SFLSKHDNNL ANHNPASTIP KSNTSSISPT GLSIRNNTGF NLIGSPEKES INVAQGSQKK 540 PRSNEMLHSP NSVPSINMDV KPNEEQMSIK FGDDRQNRDG FSLMGGPTNF MGGFGSYPIG 600 EIGRFSTEQF SAPYSTSGTV SLTLGLPHSE NLSMSATHHS FLPIPTQSIQ MGRGVVEIGE 660 ANEFGSLNTP TSAHSTSVYE NFNIQNRKRF AAPLLPDFVA

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MAAYFDGNSE IQGGNDGLQT LILMNPAGYV GFSETQQPPA GGSNLVFFNS NPLGNSLNLP  60
HARPSSQQQQ FVGIPLATSV FTAPSSFPDG TTTPTVHSQH DISALHGFLA RSHEYGFYNP  120
SNDIMEAREV TRAQQQGLSL SLSSQQPGFG NFRPEREELV TTVSPTAGGG SSSSVQSVPL  180
SPKYLKAAQE LLDEVVNVGK AVKTSTTTED VNYSQKSKNN GESSGNMATA AGQEGGETNS  240
KRDGPELSAA ERQEIQMKKA KLVNMLDEVE QRYRHYHQQM QSVISWLEQA AGIGSAKTYT  300
ALALKTISKQ FRCLKDAITG QIRSASKTLG EDDSFGGKIE GSRLKFVDNQ IRQQRALQQL  360
GMIQHNAWRP QRGLPERAVS VLRAWLFEHF LHPYPRDSDK MMLAKQTGLT RSQVSNWFIN  420
ARVRLWKPMV EEMYLEEIKE QEQNGSDLEK TSKLGEQNED STSRSIGPQE KSPRSDSQNK  480
SFLSKHDNNL ANHNPASTIP KSNTSSISPT GLSIRNNTGF NLIGSPEKES INVAQGSQKK  540
PRSNEMLHSP NSVPSINMDV KPNEEQMSIK FGDDRQNRDG FSLMGGPTNF MGGFGSYPIG  600
EIGRFSTEQF SAPYSTSGTV SLTLGLPHSE NLSMSATHHS FLPIPTQSIQ MGRGVVEIGE  660
ANEFGSLNTP TSAHSTSVYE NFNIQNRKRF AAPLLPDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	374	432	5	63	Homeobox protein Meis2
3k2a_B	3e-16	374	432	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU686385	0.0	EU686385.1 Solanum etuberosum BEL29 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628712.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_009628714.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_009628715.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-158	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1S3XS20	0.0	A0A1S3XS20_TOBAC; BEL1-like homeodomain protein 1
STRING	XP_009628712.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-151	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]