PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 513aa MW: 58585.5 Da PI: 5.8389 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 299.3 | 9.8e-92 | 142 | 511 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl.fsevsPilkfs 94 + Ll++Ae vs+++ +a+++L + + l+s++g+p qR+++yf++AL++r+ r++ +l ++++ et+ + ++++ a +l f++ P+ ++ XP_009628661.1 142 AQILLAAAEKVSDQQYDRARKMLMQCQLLSSNTGNPAQRAVFYFAQALEERIDRETGRLIPKIHSVETDGSIcIASRFDASHLaFHQEVPFTQVV 236 689***************************************************999998888888887655766666666667*********** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 h+t qaIle+v+++++vH iDf i G+QW++L+qa a+R+ ++ +++iT+v+s ++ke++eetg+ L++fA++l+ pf+f+++ + ++ XP_009628661.1 237 HFTGIQAILESVATKSKVHLIDFLIRTGVQWASLIQAAAERKdNPIEHMKITVVES---VNKERVEETGKSLESFAKSLNFPFSFKIVFLPDRNQ 328 *****************************************955566*********...78**************************9999**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 l+ ++++vkp+E +++ ++ l + e+ +le ++++++l+P+++vv+e ea++ns+ F++rf+++l yysa+fd+le + r++++r+ XP_009628661.1 329 LTEDHFDVKPDEGVVIYAAFFLRAMICEPNCLET----AMRVIRRLQPELMVVSEVEANLNSPMFVNRFIDSLFYYSAFFDCLEDVMKRDDQHRM 419 **************************88888888....********************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++E + g i+n+v eg+er+ + +l Wr+ ++++G+++v+lse+ qa+l++++++ + + + + sl+ Wk+ p++++SaW+ XP_009628661.1 420 TLESVTYGGGIRNIVGSEGKERVCKSVNLDVWRSFFKRFGMEEVKLSETCLYQANLIIEQFAcRNSCSADVNGRSLTVSWKGTPIYFTSAWK 511 **************************************************************888899999999*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.426 | 115 | 490 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-89 | 142 | 511 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MEDSTDIQNF CTNYGFYQEY AANPQVQETN KQQEEMNVYA VTPQVQTGSH VDKTPFLSLA 60 PFELLRNNPS RWKNTEGDKV RNLNEGTNAY QKLSAMQIMR LAGERFIQFS SNKFININNL 120 LHLYGSALSN LSPEDNQDVE LAQILLAAAE KVSDQQYDRA RKMLMQCQLL SSNTGNPAQR 180 AVFYFAQALE ERIDRETGRL IPKIHSVETD GSICIASRFD ASHLAFHQEV PFTQVVHFTG 240 IQAILESVAT KSKVHLIDFL IRTGVQWASL IQAAAERKDN PIEHMKITVV ESVNKERVEE 300 TGKSLESFAK SLNFPFSFKI VFLPDRNQLT EDHFDVKPDE GVVIYAAFFL RAMICEPNCL 360 ETAMRVIRRL QPELMVVSEV EANLNSPMFV NRFIDSLFYY SAFFDCLEDV MKRDDQHRMT 420 LESVTYGGGI RNIVGSEGKE RVCKSVNLDV WRSFFKRFGM EEVKLSETCL YQANLIIEQF 480 ACRNSCSADV NGRSLTVSWK GTPIYFTSAW KFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-44 | 164 | 511 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628661.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S4A0D8 | 0.0 | A0A1S4A0D8_TOBAC; DELLA protein RGL1-like | ||||
STRING | XP_009628661.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13910 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-55 | RGA-like 1 |