PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628588.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 296aa    MW: 31442.6 Da    PI: 9.7674
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.1e-10103128227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ f     Ck+Gd+C+FaHg+
  XP_009628588.1 103 KTRLCNKFNTAEGCKFGDKCNFAHGE 128
                     8***********************96 PP
2zf-CCCH345.1e-11263287126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C +fa+ G C +G+rC+FaHg
  XP_009628588.1 263 FKTKICENFAK-GLCTFGERCHFAHG 287
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.43764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6763765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-63864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
Gene3DG3DSA:4.10.1000.102.6E-1499133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-8100132IPR000571Zinc finger, CCCH-type
SMARTSM003560.001101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882101129IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.11E-14164244IPR004088K Homology domain, type 1
SMARTSM003222.9E-10171241IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.6E-14172242IPR004088K Homology domain, type 1
PROSITE profilePS5008413.942172236IPR004088K Homology domain, type 1
PfamPF000131.9E-8174238IPR004088K Homology domain, type 1
CDDcd001051.18E-12174236No hitNo description
Gene3DG3DSA:4.10.1000.101.9E-15260292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-9261292IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7262288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286262289IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8263287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEFGGDRKRG RPHGPMNGNG TFKKSKQELE SIPTGIGSKL KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGLKA VTQMLGSNPA LPAASRNSIA PSFPDGSSPP AVKTRLCNKF NTAEGCKFGD  120
KCNFAHGEWE LGKPMAPLHE ESHGRFQMHG RYGSRPETTP AGLGAAASFG SSATAKISVD  180
ASLAGPIIGK GGVNSKQISR VTGAKFSIRD HESDPNLRNI ELEGTIDQIG QASQMVRELI  240
QSVTAKSAAP MMKNPSSTAT SNFKTKICEN FAKGLCTFGE RCHFAHGAEE LRRSGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628588.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_018634040.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_018634041.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-111C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S4A4V50.0A0A1S4A4V5_TOBAC; zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A1U7YM220.0A0A1U7YM22_NICSY; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009628588.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-77C3H family protein