PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628384.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 543aa    MW: 59019.8 Da    PI: 4.6663
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.43.7e-061474755
                    --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    f+++++ e+e+  +      p +e    LA+k            ++ +qV +WFqNrR+  
  XP_009628384.1 14 FNATEVAEMEAILQAhnATMPAREVLVALAEKFsssaersgkiMVQMKQVWNWFQNRRYAI 74
                    666666777777764325567777777888888888888887799*************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-9475IPR009057Homeodomain-like
SMARTSM003890.006781IPR001356Homeobox domain
PROSITE profilePS500718.9241377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-61379IPR009057Homeodomain-like
CDDcd000860.00221375No hitNo description
PfamPF167191.6E-41146273IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGRPPSNGGP TFRFNATEVA EMEAILQAHN ATMPAREVLV ALAEKFSSSA ERSGKIMVQM  60
KQVWNWFQNR RYAIRAKTAK VPGKFSTPSV PQSDPAMVRA PAKLSTSPVP QSDPAAVRIM  120
PQAPQPIPSP QVAVQNVGRS ASDNIQMEFE AKSARDGAWY DVASFLSHRS VETADPEVLV  180
RFAGFGAEED EWVNVRKHVR QRSLPCESSE CVAVLPGDLI LCFQEGKEQA LYFDAHVLDA  240
QRRRHDVRGC RCRFLVRYDH DQSEEIVPLR KVCRRPETDY RLQQLNAESL KQQKIGNDIT  300
RGNTTKVYPP AETTQKAQTE SRIKPAEPTQ KQPAPEDTTK PVPNFAPMQL QKSSTDSLTG  360
NTLAETTPQC MEEMTEKPVA GTTEVPDEAP EKSPVEAPAE TAGKSPAETT LEPPAASTSK  420
PDEAPEEPPT ETTLKPPAAS TTKPDEAAEQ PPAEATLKPP APSTSNPDEA PEEPPAETTL  480
EPPADSTSKP AEEPEEPPAE TSLKPPADSI SKPAEAPAEQ PKEEEHVYAG ATAASMDHDN  540
ASV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-481472774134SHH1 SAWADEE
4iur_B3e-481472774134SHH1 SAWADEE
4iut_A3e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754492e-95HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628384.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3
SwissprotQ8RWJ71e-142SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1S4BVC00.0A0A1S4BVC0_TOBAC; protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X3
STRINGXP_009628382.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-131sequence-specific DNA binding transcription factors;sequence-specific DNA binding