PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628382.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 560aa    MW: 60749.8 Da    PI: 4.7004
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.33.9e-061474755
                    --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    f+++++ e+e+  +      p +e    LA+k            ++ +qV +WFqNrR+  
  XP_009628382.1 14 FNATEVAEMEAILQAhnATMPAREVLVALAEKFsssaersgkiMVQMKQVWNWFQNRRYAI 74
                    666666777777764325567777777888888888888887799*************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-9475IPR009057Homeodomain-like
SMARTSM003890.006781IPR001356Homeobox domain
PROSITE profilePS500718.9241377IPR001356Homeobox domain
CDDcd000860.002131375No hitNo description
Gene3DG3DSA:1.10.10.602.1E-61379IPR009057Homeodomain-like
PfamPF167191.7E-41163290IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGRPPSNGGP TFRFNATEVA EMEAILQAHN ATMPAREVLV ALAEKFSSSA ERSGKIMVQM  60
KQVWNWFQNR RYAIRAKTAK VPGKFSTPSV PQSDPAMVRA PAKLSTSPVP QSDPAAVRIM  120
PQAPQPIPSP QVTVKSMPQA PQPLPAPSVA VQNVGRSASD NIQMEFEAKS ARDGAWYDVA  180
SFLSHRSVET ADPEVLVRFA GFGAEEDEWV NVRKHVRQRS LPCESSECVA VLPGDLILCF  240
QEGKEQALYF DAHVLDAQRR RHDVRGCRCR FLVRYDHDQS EEIVPLRKVC RRPETDYRLQ  300
QLNAESLKQQ KIGNDITRGN TTKVYPPAET TQKAQTESRI KPAEPTQKQP APEDTTKPVP  360
NFAPMQLQKS STDSLTGNTL AETTPQCMEE MTEKPVAGTT EVPDEAPEKS PVEAPAETAG  420
KSPAETTLEP PAASTSKPDE APEEPPTETT LKPPAASTTK PDEAAEQPPA EATLKPPAPS  480
TSNPDEAPEE PPAETTLEPP ADSTSKPAEE PEEPPAETSL KPPADSISKP AEAPAEQPKE  540
EEHVYAGATA ASMDHDNASV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-481642944134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-481642944134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-481642944134SHH1 SAWADEE
4iur_B2e-481642944134SHH1 SAWADEE
4iut_A2e-481642944134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-481642944134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-481642944134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-481642944134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-481642944134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-481642944134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754492e-95HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628382.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-140SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1S4BV620.0A0A1S4BV62_TOBAC; protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
STRINGXP_009628382.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-128sequence-specific DNA binding transcription factors;sequence-specific DNA binding