PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24757.6 Da PI: 9.4532 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.8e-13 | 92 | 144 | 2 | 54 |
AP2 2 gykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +y GV +++ +g + +eIrdp +g +r +lg++ t+e+Aa a+++a+ k++ XP_009628238.1 92 RYIGVKRRP-WGTfsaFSVEIRDPERRG--ARLWLGTYETPEDAALAYDQAAFKIR 144 699***9*9.***777779****84444..***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.5E-25 | 92 | 159 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.508 | 92 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-17 | 92 | 154 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.75E-22 | 92 | 155 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-25 | 92 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 92 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-7 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-7 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
FLQSIENHLL NYDSDFSEIL SPMSSSNALP NSPSSSFGSF PSAENSLDTS LWDENFEETI 60 PNLQLEEKSE SEEETKGHVV AREKTATQDW RRYIGVKRRP WGTFSAFSVE IRDPERRGAR 120 LWLGTYETPE DAALAYDQAA FKIRSSRARL NFPHLIGSNM PKPARVTARR SRTRSPEPSS 180 SSCTSSSEKG TRKRKIDLIN SIAKAKFIRH SWNLQMLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-23 | 91 | 159 | 4 | 69 | ATERF1 |
3gcc_A | 3e-23 | 91 | 159 | 4 | 69 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB828149 | 0.0 | AB828149.1 Nicotiana tabacum ERF115 mRNA for ethylene response factor 115, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628238.2 | 1e-141 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | S0BDM4 | 1e-124 | S0BDM4_TOBAC; Ethylene response factor 115 | ||||
STRING | XP_009628238.1 | 1e-159 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-30 | ethylene-responsive element binding factor 13 |