PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 220aa MW: 25315.8 Da PI: 6.7079 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.6 | 2.6e-28 | 133 | 191 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk++++pr+YY+C+s C+vkkkver+ +d +++++tYeg+Hnhe XP_009628186.1 133 LDDGYKWRKYGKKKVKSNTNPRNYYKCSSGCCKVKKKVERDGNDSSYLITTYEGKHNHE 191 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-30 | 119 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 126 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.482 | 128 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-29 | 133 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-22 | 134 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MFGSSTFQET INISHQTINP NFAFSPLINM NQDHCHNMYQ DFDTSFIDQL INDSEEYSNS 60 NNSFNTSLYS QNPFMQQEIS TSTYSGSCSS ASSFDATPTN IHMNENSSKG IEKEKKAEKH 120 AIAFRTKTEL EILDDGYKWR KYGKKKVKSN TNPRNYYKCS SGCCKVKKKV ERDGNDSSYL 180 ITTYEGKHNH ESPFIIYCQE KSTVSFHNDQ WSLQLADSLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-24 | 123 | 193 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-24 | 123 | 193 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ460475 | 0.0 | DQ460475.1 Nicotiana tabacum cultivar Samsun NN putative WRKY transcription factor (WRKY12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312362.1 | 1e-164 | probable WRKY transcription factor 51 | ||||
Refseq | XP_009628186.1 | 1e-164 | PREDICTED: probable WRKY transcription factor 51 isoform X2 | ||||
TrEMBL | Q1KRL7 | 1e-163 | Q1KRL7_TOBAC; Putative WRKY transcription factor | ||||
STRING | XP_009628186.1 | 1e-164 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13494 | 12 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 9e-15 | WRKY DNA-binding protein 51 |