PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 441aa MW: 48583.2 Da PI: 7.4775 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.5e-18 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l d+++++G g+W+++ ++ g+ R++k+c++rw ++l XP_009628008.1 29 KGPWTKEEDAILMDYIRKHGEGNWSAVQKHSGLARCGKSCRLRWANHL 76 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 40.4 | 7e-13 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ T+eE + ++++++G++ W+ Ia++++ gRt++++k++w++ XP_009628008.1 82 KGALTPEEVRHINELHAKMGNK-WAQIAAKLP-GRTDNEIKNYWNT 125 6788******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.961 | 24 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.18E-30 | 26 | 123 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 27 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 29 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-12 | 31 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-23 | 80 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.113 | 81 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-12 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-12 | 82 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.29E-9 | 86 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MTSKVGVDSP SVEEASGGGS TRGGVPLKKG PWTKEEDAIL MDYIRKHGEG NWSAVQKHSG 60 LARCGKSCRL RWANHLRPDL KKGALTPEEV RHINELHAKM GNKWAQIAAK LPGRTDNEIK 120 NYWNTRIKKR QRAGLQIYPP DISFQAFSEN KQNKELGIFS SANSHPDFLP INGFTIPTVE 180 FKKLEPSQLL YPRALLNIAA SSFFDIPATS LLAQGLSSSN TCSGLSTMHP SKRIRGSESW 240 FFGLNDDLFQ ACHQYQNDGS LLAQSLGFSS SYTHNLTSDH HPSFSVEIPG SHAPLNGNSS 300 SSEPKWAKKL ELPSLQIQME NWGSPSPLPS LESFDTLIQS PPNEHADSGS LSPRNSGLLD 360 AVLYESQTSK ASKNNSHQET SCDVDDSYPD LQETQWGRYS DPISPLGHSA ASVLSKYTPM 420 EVHWMSPPVN SDGGWLSRRL T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 24 | 130 | 1 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444814.1 | 0.0 | PREDICTED: transcription factor GAMYB-like, partial | ||||
TrEMBL | A0A1S3XY87 | 0.0 | A0A1S3XY87_TOBAC; transcription factor GAMYB-like | ||||
STRING | XP_009628008.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-84 | myb domain protein 65 |