PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009627677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 244aa MW: 27700.5 Da PI: 7.1618 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.9 | 1.9e-30 | 51 | 156 | 3 | 105 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.kaaksa 94 g+kdrhsk++T +g+RdRR+Rls++ a++++dLq++LG+ ++sk ++WLl++ k++i+el+ ++ +++s+ + +++ +s+ ++ k+ +++ XP_009627677.1 51 GGKDRHSKVCTIRGLRDRRIRLSVSSAIQLYDLQNRLGLGQPSKVVDWLLNATKHEIDELPPLQIPPKSFNqfHQIDDQYFDSTLREIsKEITTT 145 79*************************************************************88888555333333333333222222333333 PP TCP 95 akskksqksaa 105 +++++++++++ XP_009627677.1 146 NEQENQESNQS 156 33333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.14 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-27 | 52 | 153 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MNSSKKNVDQ TNQEAGGTNK SQFSRTPSGS RQQSWTNFQN PRIVRVSRSF GGKDRHSKVC 60 TIRGLRDRRI RLSVSSAIQL YDLQNRLGLG QPSKVVDWLL NATKHEIDEL PPLQIPPKSF 120 NQFHQIDDQY FDSTLREISK EITTTNEQEN QESNQSSFLG MLNNPTPFNS YYYSEPNTFS 180 IGTEDSQNNV SGNITMPIFS GSQLYFHPTA TILTPSAHSL DMISNMSYDQ AKGFRSQEDT 240 DHYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-17 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-17 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018633676.1 | 1e-108 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | A0A1S3YB68 | 1e-106 | A0A1S3YB68_TOBAC; transcription factor TCP5-like | ||||
STRING | XP_009627677.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 6e-45 | plastid transcription factor 1 |