PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009627547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 165aa MW: 18854.8 Da PI: 10.7119 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 1e-13 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+ +++ G g+ ++ ++ g+ R++k+c++rw +yl XP_009627547.1 16 KGPWTPAEDLKLISFIQKNGHGNRRSLPKQAGLLRSGKSCRLRWINYL 63 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.1e-15 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+e +++++ lG++ W++Ia++++ gRt+++ k+ w++ XP_009627547.1 69 RGNFTPEEEETIIKLHDSLGNR-WSKIASYFP-GRTDNENKNVWNT 112 89********************.*********.******9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-21 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.836 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.51E-27 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-8 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-11 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.62E-7 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.747 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 67 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-11 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-8 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MGKGRAPCCD KSKVKKGPWT PAEDLKLISF IQKNGHGNRR SLPKQAGLLR SGKSCRLRWI 60 NYLRPDVKRG NFTPEEEETI IKLHDSLGNR WSKIASYFPG RTDNENKNVW NTQLKKRVGI 120 LKKDIKINTT TQEAFETNNK GQYIDVATSI NIKEGLGKMM WPLIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 16 | 118 | 7 | 108 | B-MYB |
1gv2_A | 2e-25 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244803 | 1e-34 | AC244803.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-8f2 map 10, complete sequence. | |||
GenBank | AC244937 | 1e-34 | AC244937.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-8f2 map 10, complete sequence. | |||
GenBank | HG975449 | 1e-34 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 1e-34 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593119.1 | 1e-99 | PREDICTED: myb-related protein Myb4 | ||||
Swissprot | Q9SA47 | 2e-67 | MYB58_ARATH; Transcription factor MYB58 | ||||
TrEMBL | A0A1S4DAM3 | 2e-97 | A0A1S4DAM3_TOBAC; myb-related protein Myb4-like | ||||
STRING | XP_009627547.1 | 1e-119 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 8e-70 | myb domain protein 58 |
Publications ? help Back to Top | |||
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