PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009627424.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 23412 Da PI: 6.4175 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.4e-08 | 8 | 56 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 W+ eE+ + a+++ + +W +Ia ++ ++t +++k ++q + XP_009627424.1 8 VWSREEERAFESAIAMQHSIedskeQWQKIALIVP-NKTIEELKQHYQLL 56 6*************9887668**************.***********965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.2E-5 | 5 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-6 | 8 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.02E-7 | 9 | 57 | No hit | No description |
PROSITE profile | PS50090 | 6.33 | 9 | 57 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.98E-7 | 9 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSASTSVVWS REEERAFESA IAMQHSIEDS KEQWQKIALI VPNKTIEELK QHYQLLVDDV 60 TATDAGYVPI PNCTFSSTNE SIRGYGNELA GTTHYSNAQG GKGGCRGEFR ISRIWVILAW 120 VLYFNRLNSI NSGRRRSSIH DITIENRGDV VSNQAPITGQ QLNPHHSNVH ALGLYDGPEG 180 HPLTDPADHL VVYSGRNDTG SYSRELLFKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009627424.1 | 1e-157 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A314L2D0 | 2e-51 | A0A314L2D0_NICAT; Transcription factor myb1r1 | ||||
STRING | XP_009627424.1 | 1e-156 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5801 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-20 | MYB family protein |