PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627108.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 510aa    MW: 56373.1 Da    PI: 5.1262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.93.6e-1031245041374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykal.ppsetseknsseelaalklfsevsP 89 
                     lv+lL+++Aea++  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  s+s  +k++ +p+ ++e+++ ++laa++l++++sP
  XP_009627108.1 124 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGsTNMERLAAHFTDALQALLDGaaSGSLHAKSMfSPNYKDEQQQGDVLAAFQLLQDMSP 218
                     68***********85554449****************99*****************994333333344447777888889*************** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                     ++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ fA+++g pf+f+ 
  XP_009627108.1 219 FVKFGHFTANQAILEAVAHDRRVHIVDYDIMEGIQWASLMQALLSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAASIGQPFSFHH 313
                     ***********************************************776556*********888899999************************ PP

            GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdslea 273
                        ++ e++++ +L++ +gEa+++n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e+    ++e F+ rf+++l++ysal+dslea
  XP_009627108.1 314 CRLDSDETFKPPALKLVRGEAIIINCMLHLPHFTYRASDS---VASFLSGSKTLNPRLVTLVEEEVRPieEEEGFVGRFMDTLHHYSALYDSLEA 405
                     9999****************************98554444...459*******************987778899********************* PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
                     ++p +s++r+ vEr++lg++i   +a   + r e+++  ++W e+l+ +G+++ ++s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L
  XP_009627108.1 406 GFPLQSRARALVERVFLGPRIIGSLARTYRTRGEDER--SSWGEWLSVVGYHESNISFANHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRL 497
                     *******************************999888..99*******************************.******9768999********* PP

            GRAS 368 vsvSaWr 374
                     +s+S W+
  XP_009627108.1 498 LSASIWT 504
                     ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.42198484IPR005202Transcription factor GRAS
PfamPF035141.2E-100124504IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MATMMVDGTV PDFDYYSGLS TTTTTTTTTT TTTTTTTTSS SDDDHDHGCT WNDWSPVVDW  60
EAFSGGDNFQ DLIESMIEGN NSSGGLNISI PKSSTFYNSE DSVLMEEPEE SNNNQSEDVN  120
GLKLVHLLMA AAEALTGVNK SRELARVILV RLKELASPNG STNMERLAAH FTDALQALLD  180
GAASGSLHAK SMFSPNYKDE QQQGDVLAAF QLLQDMSPFV KFGHFTANQA ILEAVAHDRR  240
VHIVDYDIME GIQWASLMQA LLSRKDGPPT PHLRITALSR SGSGRRSFGT VQETGRRLTA  300
FAASIGQPFS FHHCRLDSDE TFKPPALKLV RGEAIIINCM LHLPHFTYRA SDSVASFLSG  360
SKTLNPRLVT LVEEEVRPIE EEEGFVGRFM DTLHHYSALY DSLEAGFPLQ SRARALVERV  420
FLGPRIIGSL ARTYRTRGED ERSSWGEWLS VVGYHESNIS FANHCQAKLL LGLFNDGYRV  480
EEIGTNKLVL GWKSRRLLSA SIWTSPDSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-591085042378Protein SCARECROW
5b3h_D5e-591085042378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627108.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1S3XIX30.0A0A1S3XIX3_TOBAC; nodulation-signaling pathway 2 protein-like
STRINGXP_009627108.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-153GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]