PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009627054.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 164aa MW: 18297.6 Da PI: 8.5888 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 145.2 | 6.8e-45 | 1 | 147 | 1 | 163 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +d+++s+e++Cyv+Cn+Cnt+lav +P++ l+ +vtv+ GhC++l ++ + q + ++ +l +++ l s k+ ++sts XP_009627054.1 1 MDLVQSPEHLCYVRCNYCNTVLAVGIPYKRLLDTVTVKYGHCSNLSFLSTRPPLQ---------GQCFDH---QLTLQQQGLCSE-FKKGQSSTS 82 57899**************************************985533333322.........222222...233334444333.344444455 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ss s++++ +p++p v++P ek+ r Psaynrf+keeiqri a+nP+i hreafsaaaknWa + XP_009627054.1 83 ASS---SSSDQSISPKAPFVVKPSEKKHRLPSAYNRFMKEEIQRIEAENPEIPHREAFSAAAKNWARY 147 555...5677888999999***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-52 | 6 | 147 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.29E-8 | 93 | 145 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.6E-5 | 101 | 146 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 8.95E-6 | 108 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MDLVQSPEHL CYVRCNYCNT VLAVGIPYKR LLDTVTVKYG HCSNLSFLST RPPLQGQCFD 60 HQLTLQQQGL CSEFKKGQSS TSASSSSSDQ SISPKAPFVV KPSEKKHRLP SAYNRFMKEE 120 IQRIEAENPE IPHREAFSAA AKNWARYISN GSPNGTLSES NTNI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016453705.1 | 1e-121 | PREDICTED: protein CRABS CLAW-like | ||||
Swissprot | Q76EJ0 | 5e-62 | YABDL_ORYSJ; Protein DROOPING LEAF | ||||
TrEMBL | A0A1S3YP10 | 1e-120 | A0A1S3YP10_TOBAC; protein CRABS CLAW-like | ||||
STRING | XP_009627054.1 | 1e-120 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5210 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 1e-60 | YABBY family protein |