PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627054.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 164aa    MW: 18297.6 Da    PI: 8.5888
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY145.26.8e-4511471163
           YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                     +d+++s+e++Cyv+Cn+Cnt+lav +P++ l+ +vtv+ GhC++l  ++ +   q          +  ++   +l  +++ l s   k+ ++sts
  XP_009627054.1   1 MDLVQSPEHLCYVRCNYCNTVLAVGIPYKRLLDTVTVKYGHCSNLSFLSTRPPLQ---------GQCFDH---QLTLQQQGLCSE-FKKGQSSTS 82 
                     57899**************************************985533333322.........222222...233334444333.344444455 PP

           YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                      ss   s++++  +p++p v++P ek+ r Psaynrf+keeiqri a+nP+i hreafsaaaknWa +
  XP_009627054.1  83 ASS---SSSDQSISPKAPFVVKPSEKKHRLPSAYNRFMKEEIQRIEAENPEIPHREAFSAAAKNWARY 147
                     555...5677888999999***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.2E-526147IPR006780YABBY protein
SuperFamilySSF470959.29E-893145IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-5101146IPR009071High mobility group box domain
CDDcd013908.95E-6108144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDLVQSPEHL CYVRCNYCNT VLAVGIPYKR LLDTVTVKYG HCSNLSFLST RPPLQGQCFD  60
HQLTLQQQGL CSEFKKGQSS TSASSSSSDQ SISPKAPFVV KPSEKKHRLP SAYNRFMKEE  120
IQRIEAENPE IPHREAFSAA AKNWARYISN GSPNGTLSES NTNI
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453705.11e-121PREDICTED: protein CRABS CLAW-like
SwissprotQ76EJ05e-62YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A1S3YP101e-120A0A1S3YP10_TOBAC; protein CRABS CLAW-like
STRINGXP_009627054.11e-120(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-60YABBY family protein