PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 439aa MW: 49494.4 Da PI: 6.3573 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.7e-17 | 108 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l+++vkqlG + W+ Ia++m R +kqc++rw+++l XP_009626870.1 108 KGPWTDEEDSKLLRLVKQLGVRKWAQIAEKMD-ARAGKQCRERWHNHL 154 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 60.2 | 4.4e-19 | 160 | 202 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eE++ lv+a+kqlG++ W+ Ia++++ gRt++++k++w+ XP_009626870.1 160 KDTWSEEEELMLVEAHKQLGNK-WAEIAKRIP-GRTENSIKNHWN 202 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.276 | 103 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-15 | 107 | 156 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.35E-30 | 107 | 201 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 109 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.93E-14 | 110 | 154 | No hit | No description |
Pfam | PF13921 | 7.7E-19 | 111 | 170 | No hit | No description |
SMART | SM00717 | 1.6E-17 | 159 | 207 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.676 | 159 | 209 | IPR017930 | Myb domain |
CDD | cd00167 | 2.94E-13 | 162 | 205 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-21 | 162 | 207 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MEGGSSAFRP YQNLPKNYLG STPPFTAIDR FLWSHENYFY PLSSSSSSSQ ANGVSWPKTL 60 PEPSFIEGFF LNEQESDLIE EANSVQKNKR ESWKKAKEGN STTNYLVKGP WTDEEDSKLL 120 RLVKQLGVRK WAQIAEKMDA RAGKQCRERW HNHLRPDIKK DTWSEEEELM LVEAHKQLGN 180 KWAEIAKRIP GRTENSIKNH WNATKRRMNS RRNKKRKNQQ DGQNERQNRS NVLQDYIRSV 240 CFADDSPLTT ATYHSGGGSG GGGGCSSTTT TVTQSNSTIT NATLTYSDDD SPSLLTHQTC 300 DEEMNFMQNL FGKNSLLSDN NGTKAIDHSM EAKVTQNLFD NNSSISNSAF NSFGENPLSN 360 GQETQLQYSQ HFCPDVYLPY LLDGSSYNPE CFGYGNSMNM QMNQASGCSS EGNNKVEVDL 420 MEFVSSSHFS QGTFNNTFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-43 | 106 | 207 | 5 | 106 | B-MYB |
1mse_C | 3e-43 | 106 | 207 | 2 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 3e-43 | 106 | 207 | 2 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 215 | KRRMNSRRNKKR |
2 | 210 | 216 | RRNKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016435339.1 | 0.0 | PREDICTED: transcriptional activator Myb-like | ||||
TrEMBL | A0A1S3X5Z3 | 0.0 | A0A1S3X5Z3_TOBAC; transcriptional activator Myb-like | ||||
STRING | XP_009626870.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4825 | 19 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 8e-62 | myb domain protein 119 |