PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626646.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 460aa MW: 52216.6 Da PI: 8.4391 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.7e-17 | 107 | 156 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_009626646.1 107 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 156 78*******************......55************************997 PP | |||||||
2 | AP2 | 42.9 | 1.2e-13 | 200 | 250 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ k +g XP_009626646.1 200 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTEVEAARAYDKAAIKCNG 250 89********.7******...5...334336**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-9 | 107 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-16 | 107 | 165 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.30E-11 | 108 | 163 | No hit | No description |
PROSITE profile | PS51032 | 17.596 | 108 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-17 | 108 | 164 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-31 | 108 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-17 | 200 | 260 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-9 | 200 | 250 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.36E-25 | 200 | 260 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-16 | 201 | 258 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-32 | 201 | 264 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.685 | 201 | 258 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 202 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 240 | 260 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MWNLNDSPHN SRGDESEEGD DEKGPCNDEK LSSESELPVT RQFFPVDELE IGAAADFDDR 60 SSRFPRAHWA GVKFYDSETS GNLPVGKATE LSQPMKKSRR GPRSRSSQYR GVTFYRRTGR 120 WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFNLEDYED NLKQQMKNLT 180 KEEFVHVLRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQL LGKKYVYLGL FDTEVEAARA 240 YDKAAIKCNG KDAVTNFDLS IYENELNSAE CTNYKAADHS LDLSLGGASS KQSSREMEDN 300 NNRDKSSSMQ FEVDWRHHGL RPKQQPSPID VDARRRDGYN ESETLQLLSQ THLHSPASFK 360 PNNNEMQRFG QYMRAAESQM IQMTFPPHFS SSNYHIQFPS SSNGGRIGAT NRRASDTQQW 420 QSNNIPPPQQ LATAAASSGF PQQILRHQNR SQKNTLMRPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626646.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X7 | ||||
Swissprot | P47927 | 1e-119 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A1S4BQY5 | 0.0 | A0A1S4BQY5_TOBAC; AP2-like ethylene-responsive transcription factor TOE3 isoform X8 | ||||
STRING | XP_009626640.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-119 | AP2 family protein |