PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626641.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 510aa MW: 57482.2 Da PI: 7.429 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 158 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_009626641.1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207 78*******************......55************************997 PP | |||||||
2 | AP2 | 42.7 | 1.4e-13 | 250 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ k +g XP_009626641.1 250 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTEVEAARAYDKAAIKCNG 300 89********.7******...5...334336**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-16 | 158 | 216 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-9 | 158 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 159 | 215 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-31 | 159 | 221 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.38E-11 | 159 | 214 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-17 | 159 | 215 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-17 | 250 | 310 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-9 | 250 | 300 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.56E-25 | 250 | 310 | No hit | No description |
SMART | SM00380 | 1.7E-32 | 251 | 314 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.685 | 251 | 308 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-16 | 251 | 308 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-6 | 252 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-6 | 290 | 310 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MWNLNDSPHN SRGDESEEGD DEKGKGVGSV SNSSSSAVDN NIEEYVSEEL EEEDNGQKGK 60 KSTNPSKIFG FSMIGPCNDE KLSSESELPV TRQFFPVDEL EIGAAADFDD RSSRFPRAHW 120 AGVKFYDSET SGNLPVGKAT ELSQPMKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG 180 KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFNLEDYE DNLKQMKNLT KEEFVHVLRR 240 QSTGFPRGSS KYRGVTLHKC GRWEARMGQL LGKKYVYLGL FDTEVEAARA YDKAAIKCNG 300 KDAVTNFDLS IYENELNSAE CTNYKAADHS LDLSLGGASS KQSSREMEDN NNRDKSSSMQ 360 FEVDWRHHGL RPKQQPSPID VDARRRDGYN ESETLQLLSQ THLHSPASFK PNNNEMQRFG 420 QYMRAAESQM IQMTFPPHFS SSNYHIQFPS SSNGGRIGAT NRRASDTQQW QSNNIPPPQQ 480 LATAAASSGF PQQILRHQNR SQKNTLMRPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626641.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Swissprot | P47927 | 1e-120 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A1S4BQN5 | 0.0 | A0A1S4BQN5_TOBAC; AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
STRING | XP_009626640.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-119 | AP2 family protein |