PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626545.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 350aa MW: 38247.1 Da PI: 8.4596 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.6e-12 | 13 | 35 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCk+G++CkF+H++ XP_009626545.1 13 ECQYYLKTGTCKFGATCKFHHPR 35 7********************96 PP | |||||||
2 | zf-CCCH | 34.6 | 3.2e-11 | 58 | 81 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rt +Ck+G++CkF+H++ XP_009626545.1 58 NECTYYMRTAQCKFGSTCKFHHPE 81 68********************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.2e-12 | 211 | 236 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_009626545.1 211 GQPECQFYMKTGDCKFGAVCRFHHPR 236 5799********************96 PP | |||||||
4 | zf-CCCH | 37.6 | 3.6e-12 | 256 | 282 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ XP_009626545.1 256 PGEPMCIFYSRYGICKFGPSCKFDHPM 282 57899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.92 | 8 | 36 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-5 | 8 | 35 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-6 | 12 | 37 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-10 | 13 | 35 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-5 | 14 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.986 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-9 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 60 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.967 | 209 | 237 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-6 | 212 | 239 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-9 | 212 | 236 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 215 | 239 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 255 | 283 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 255 | 282 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-9 | 258 | 282 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-5 | 258 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 260 | 280 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MNGEYPERIG QLECQYYLKT GTCKFGATCK FHHPRDKAGI AGRVTLNVLG YPLRPNENEC 60 TYYMRTAQCK FGSTCKFHHP EPSNMMVSSR GSPVYPPGPS PTTPGQMSYP LSRASFISGA 120 RWQGSSSYAP LPVLQGVVSF PGFTYNGQLG AVSSAEDQQQ TAGNNQVYGS SRSSDKATMG 180 SEGMNSSYRA SSLPVGYYAL EGENVFPERL GQPECQFYMK TGDCKFGAVC RFHHPRERLL 240 PPPDCLLSPI GLPLRPGEPM CIFYSRYGIC KFGPSCKFDH PMRVFTYNIS ASSSTDDPSV 300 RRLLGSSSGT GALTLTSEGI VEAASTTPRR LSLSETRKMP PGDNNFDREG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626545.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X6 | ||||
Refseq | XP_016437924.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
Swissprot | Q9SWF9 | 1e-176 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1S3XDL2 | 0.0 | A0A1S3XDL2_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
STRING | XP_009769498.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-129 | zinc finger protein 1 |