PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 381aa MW: 41588 Da PI: 8.3669 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.9 | 2.9e-12 | 44 | 66 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCk+G++CkF+H++ XP_009626544.1 44 ECQYYLKTGTCKFGATCKFHHPR 66 7********************96 PP | |||||||
2 | zf-CCCH | 34.5 | 3.6e-11 | 89 | 112 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rt +Ck+G++CkF+H++ XP_009626544.1 89 NECTYYMRTAQCKFGSTCKFHHPE 112 68********************96 PP | |||||||
3 | zf-CCCH | 38.1 | 2.5e-12 | 242 | 267 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_009626544.1 242 GQPECQFYMKTGDCKFGAVCRFHHPR 267 5799********************96 PP | |||||||
4 | zf-CCCH | 37.5 | 4e-12 | 287 | 313 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ XP_009626544.1 287 PGEPMCIFYSRYGICKFGPSCKFDHPM 313 57899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.8E-5 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.92 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 44 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 45 | 66 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.986 | 85 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-9 | 88 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-4 | 91 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 240 | 267 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.967 | 240 | 268 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-9 | 243 | 267 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 243 | 270 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-5 | 246 | 270 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 286 | 314 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 286 | 313 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 289 | 313 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-5 | 289 | 313 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 291 | 311 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MDESSSPWIF LCPKDLPLCH RLSAKALAAA SMNGEYPERI GQLECQYYLK TGTCKFGATC 60 KFHHPRDKAG IAGRVTLNVL GYPLRPNENE CTYYMRTAQC KFGSTCKFHH PEPSNMMVSS 120 RGSPVYPPGP SPTTPGQMSY PLSRASFISG ARWQGSSSYA PLPVLQGVVS FPGFTYNGQL 180 GAVSSAEDQQ QTAGNNQVYG SSRSSDKATM GSEGMNSSYR ASSLPVGYYA LEGENVFPER 240 LGQPECQFYM KTGDCKFGAV CRFHHPRERL LPPPDCLLSP IGLPLRPGEP MCIFYSRYGI 300 CKFGPSCKFD HPMRVFTYNI SASSSTDDPS VRRLLGSSSG TGALTLTSEG IVEAASTTPR 360 RLSLSETRKM PPGDNNFDRE G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769504.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
Swissprot | Q9SWF9 | 1e-178 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1U7W4F0 | 0.0 | A0A1U7W4F0_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
STRING | XP_009769498.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-131 | zinc finger protein 1 |