PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 406aa MW: 44608.4 Da PI: 8.5541 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.1 | 2.3e-11 | 42 | 67 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_009626543.1 42 GEPDCSYYIRTGLCRFGSTCRFNHPP 67 6899********************97 PP | |||||||
2 | zf-CCCH | 30.8 | 5.1e-10 | 72 | 91 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ XP_009626543.1 72 YYLKTGTCKFGATCKFHHPR 91 8*****************96 PP | |||||||
3 | zf-CCCH | 34.3 | 3.9e-11 | 114 | 137 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rt +Ck+G++CkF+H++ XP_009626543.1 114 NECTYYMRTAQCKFGSTCKFHHPE 137 68********************96 PP | |||||||
4 | zf-CCCH | 38 | 2.7e-12 | 267 | 292 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_009626543.1 267 GQPECQFYMKTGDCKFGAVCRFHHPR 292 5799********************96 PP | |||||||
5 | zf-CCCH | 37.4 | 4.3e-12 | 312 | 338 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ XP_009626543.1 312 PGEPMCIFYSRYGICKFGPSCKFDHPM 338 57899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.483 | 40 | 68 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-5 | 40 | 67 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-8 | 42 | 67 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 45 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 46 | 66 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.032 | 68 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 72 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.493 | 72 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-8 | 72 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.986 | 110 | 138 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-9 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-4 | 116 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.967 | 265 | 293 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-5 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-9 | 268 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 271 | 295 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 311 | 339 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 311 | 338 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 314 | 338 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 314 | 338 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-4 | 316 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MDISMSEGPP SLSPSLRQDS LWQMNLRSME SMESGPYPVR EGEPDCSYYI RTGLCRFGST 60 CRFNHPPNRK LYYLKTGTCK FGATCKFHHP RDKAGIAGRV TLNVLGYPLR PNENECTYYM 120 RTAQCKFGST CKFHHPEPSN MMVSSRGSPV YPPGPSPTTP GQMSYPLSRA SFISGARWQG 180 SSSYAPLPVL QGVVSFPGFT YNGQLGAVSS AEDQQQTAGN NQVYGSSRSS DKATMGSEGM 240 NSSYRASSLP VGYYALEGEN VFPERLGQPE CQFYMKTGDC KFGAVCRFHH PRERLLPPPD 300 CLLSPIGLPL RPGEPMCIFY SRYGICKFGP SCKFDHPMRV FTYNISASSS TDDPSVRRLL 360 GSSSGTGALT LTSEGIVEAA STTPRRLSLS ETRKMPPGDN NFDREG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016437923.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1S3XDR9 | 0.0 | A0A1S3XDR9_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
STRING | XP_009769498.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-152 | zinc finger protein 1 |