PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009626389.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 526aa MW: 57192.1 Da PI: 8.8172

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009626389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_009626389.1 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP
2	zf-C2H2	12.7	0.00039	172	194	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_009626389.1 172 WKCEKCSKKYAVQSDWKAHSKTC 194 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	95	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.64E-6	95	118	No hit	No description
SMART	SM00355	0.017	96	118	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	96	118	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.5E-5	96	118	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	137	167	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.7E-4	160	193	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.64E-6	167	192	No hit	No description
SMART	SM00355	140	172	192	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NTTGGIYPPQ YNFAPPNQQI 60 QAQHQIKKKR NQPGNPDPGA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRTSK EIRKKVYVCP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKK 180 YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITGNPILPSQ 240 QSQFNSHEFP AAFSLKKEQQ TGFNLRPEIP PWLMTCQPLV GGGGPGPGPP PPQPIDLSSS 300 IFQSTRFEQD YTPNHGQDLN PNPSLNFSST GSLPSPHISA TALLQKAAQM GATMSNKSST 360 VSAAATGPSP TMLMRPHQFH VSAAAAESVS NNATDFGLNL SSREDLTTGF FNSLASYGNK 420 AATITAAAVA TVPVTGPLTS APSPTSFIMT SFSSANTTGF EGSNFEDEFG GIGILNSKKG 480 NDGNDDMTKD FLGLRPLSHS DIFNIAGLVN TTTIENQSQN HKTWQS

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NTTGGIYPPQ YNFAPPNQQI  60
QAQHQIKKKR NQPGNPDPGA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRTSK EIRKKVYVCP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKK  180
YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITGNPILPSQ  240
QSQFNSHEFP AAFSLKKEQQ TGFNLRPEIP PWLMTCQPLV GGGGPGPGPP PPQPIDLSSS  300
IFQSTRFEQD YTPNHGQDLN PNPSLNFSST GSLPSPHISA TALLQKAAQM GATMSNKSST  360
VSAAATGPSP TMLMRPHQFH VSAAAAESVS NNATDFGLNL SSREDLTTGF FNSLASYGNK  420
AATITAAAVA TVPVTGPLTS APSPTSFIMT SFSSANTTGF EGSNFEDEFG GIGILNSKKG  480
NDGNDDMTKD FLGLRPLSHS DIFNIAGLVN TTTIENQSQN HKTWQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	168	229	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-35	168	229	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	134	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013659	0.0	BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009626387.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Refseq	XP_009626389.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-125	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1S4ARV0	0.0	A0A1S4ARV0_TOBAC; protein indeterminate-domain 7-like
STRING	XP_009626387.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-111	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]