PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009626377.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 322aa MW: 35676.9 Da PI: 8.3055

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009626377.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.9	4.1e-33	158	216	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+ed+++v++tYeg H+h+ XP_009626377.1 158 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSEDTSIVVTTYEGIHTHP 216 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-33	143	218	IPR003657	WRKY domain
SuperFamily	SSF118290	6.28E-29	150	218	IPR003657	WRKY domain
PROSITE profile	PS50811	30.71	153	218	IPR003657	WRKY domain
SMART	SM00774	4.2E-39	158	217	IPR003657	WRKY domain
Pfam	PF03106	4.3E-26	159	216	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MADKENKLKP DTSSLEISTF SDQIPASTYS LFDMPTCETE KGSSLSLMFS SHPITTPSIF 60 DLLQPPPPPP VPLLVPSQLK IVNKIPSSEI VNTPNSSSIS SSSTEAAAND DQLQATTKTV 120 DDDDEHKNKK QLKPKKKNQK RQREPRFAFM TKSEVDHLDD GFRWRKYGQK AVKNSPFPRS 180 YYRCTTATCG VKKRVERSSE DTSIVVTTYE GIHTHPCPIT PRTSIGILPE ATAYGGSIGG 240 GGGSSSLFIP QFHYQASQQQ QQTYFQTPTL PINFISTSDS SLYSSQERRF SPSTSSSSSL 300 ARDHGLLQDM VPSQMRRDPK EE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-25	151	218	10	77	Probable WRKY transcription factor 4
2lex_A	4e-25	151	218	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009626377.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	O22900	3e-55	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A1S4C836	1e-177	A0A1S4C836_TOBAC; probable WRKY transcription factor 48 isoform X2
STRING	XP_009626377.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	4e-48	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]