PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 547aa MW: 61002.9 Da PI: 5.4436 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 451.8 | 4.4e-138 | 177 | 547 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+++L++cA+a+++++l a++l+++l++ +s g+pmqRl ay++e+L arla+s+s++ykal+++e + s+e +++++l++e++P++kf++ XP_009626207.1 177 LKQVLIACAKAIADNNLVTAEWLMSELRTVVSVCGSPMQRLGAYMLEGLVARLASSGSSIYKALRCKEPT---SVELMSYMHLLYEICPYFKFGY 268 5799*****************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 l aN aI++av++e+++HiiDf+i qG QW++L++aLa+Rp+gpp++RiTg+++++s + +e +g+rL+++A++++vpfef+ va +++d XP_009626207.1 269 LSANGAIVDAVKEENTIHIIDFQIAQGSQWITLIHALAARPGGPPRIRITGIDDSTSAyaRGGGIEIVGRRLSSIAASCNVPFEFHS-VAASCSD 362 ******************************************************998899999************************.799**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +e+e+L+v+pgE laVn++l lh+++desv ++++rd++L++vkslsPk+v++veqe+++n+ +F+ rfle+l+yy ++f+s+++ lpr++++ri XP_009626207.1 363 VEIEHLKVRPGEPLAVNFALVLHHMPDESVGTKNHRDRLLRMVKSLSPKIVTLVEQESNTNTVQFFPRFLETLNYYLSIFESIDVALPRDHKQRI 457 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+reivn++acegaer+erhe le+Wr+r+ +aGF+p+pls+++++++k+ll+++++ y+++e++g+l+lgW++r Lv+ +aW+ XP_009626207.1 458 NVEQHCLAREIVNIIACEGAERVERHELLERWRSRFLMAGFNPYPLSSSVNATIKTLLENYYQS-YTLDERNGALYLGWMNRDLVASCAWK 547 **************************************************************55.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.282 | 151 | 528 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-135 | 177 | 547 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MRPSLNAKDI NEFNRFYNQP VEDQESFSLP SINNPNSNQL LYADCGQQTQ FSALKHNQYC 60 YVESSTGNSN ELVSDSPPVD TFFAGDNSMM HQGSDSCPSD MHHSPNDTYH SSGNSSCFTS 120 DGTGLKHKLK ELETAMLGPD SESLESYNTT PLAAANQISS ESDKWVDMME MMPNGDLKQV 180 LIACAKAIAD NNLVTAEWLM SELRTVVSVC GSPMQRLGAY MLEGLVARLA SSGSSIYKAL 240 RCKEPTSVEL MSYMHLLYEI CPYFKFGYLS ANGAIVDAVK EENTIHIIDF QIAQGSQWIT 300 LIHALAARPG GPPRIRITGI DDSTSAYARG GGIEIVGRRL SSIAASCNVP FEFHSVAASC 360 SDVEIEHLKV RPGEPLAVNF ALVLHHMPDE SVGTKNHRDR LLRMVKSLSP KIVTLVEQES 420 NTNTVQFFPR FLETLNYYLS IFESIDVALP RDHKQRINVE QHCLAREIVN IIACEGAERV 480 ERHELLERWR SRFLMAGFNP YPLSSSVNAT IKTLLENYYQ SYTLDERNGA LYLGWMNRDL 540 VASCAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-65 | 184 | 546 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-65 | 184 | 546 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626207.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_018633424.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_018633425.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A1S4AFF8 | 0.0 | A0A1S4AFF8_TOBAC; scarecrow-like transcription factor PAT1 | ||||
STRING | XP_009626207.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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