PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009625923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 146aa MW: 16655.6 Da PI: 9.4859 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108 | 4.7e-34 | 32 | 90 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver++ dpk+v++tYeg+Hnh+ XP_009625923.1 32 LDDGFKWRKYGQKVVKGNHHPRSYYRCTYPGCNVRKHVERASADPKAVITTYEGKHNHD 90 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-37 | 18 | 92 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-30 | 24 | 92 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.898 | 27 | 92 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-39 | 32 | 91 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.5E-27 | 33 | 90 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
CRKTAVEAPN LASSHKSESK IVVQTRSEVD ILDDGFKWRK YGQKVVKGNH HPRSYYRCTY 60 PGCNVRKHVE RASADPKAVI TTYEGKHNHD IPIARNRGHS TAQDSTRQLN EQDVATWRPS 120 LHENVAFHNT NEIPVCRQLK EEQIAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-40 | 23 | 92 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-40 | 23 | 92 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB711135 | 0.0 | AB711135.1 Nicotiana benthamiana NbWRKY14 mRNA for transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625923.1 | 1e-107 | PREDICTED: probable WRKY transcription factor 58, partial | ||||
Swissprot | Q9ZQ70 | 7e-44 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A1S3ZC35 | 1e-98 | A0A1S3ZC35_TOBAC; probable WRKY transcription factor 3 | ||||
STRING | XP_009625923.1 | 1e-106 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17453 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 3e-46 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
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