PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009625506.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

STAT

Protein Properties

Length: 695aa MW: 78475.8 Da PI: 5.5391

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009625506.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	189.6	3.5e-59	209	328	1	120
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 ldv+l++++++p++ +vevva L+yad+ ++vek+ d+eapLL++ydG+e++s+drp+k++ GrasfklkisqLsskcdnrLf+i+feipk+ +y XP_009625506.1 209 LDVTLMDSFSRPITEEVEVVALLVYADDEAPVEKPVDDEAPLLTNYDGIEYASSDRPSKVISGRASFKLKISQLSSKCDNRLFCIRFEIPKMGNY 303 89******************************************************************************************* PP STAT 96 pfleavskpirCisrsrntrssslt 120 pfle++s+pirCisr+rntr++sl+ XP_009625506.1 304 PFLEVFSRPIRCISRNRNTRAASLM 328 ******************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49899	6.55E-8	21	131	IPR013320	Concanavalin A-like lectin/glucanase domain
Gene3D	G3DSA:2.60.120.200	6.3E-5	64	136	IPR013320	Concanavalin A-like lectin/glucanase domain
Gene3D	G3DSA:3.30.505.10	2.5E-7	598	655	IPR000980	SH2 domain
SuperFamily	SSF55550	4.27E-10	599	659	IPR000980	SH2 domain
PROSITE profile	PS50001	10.39	601	679	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MGIQDYGFLE DLQVEFKDYD GTNGFFLCFW FYLNKASTLP STILLQIMQK HPVATSHAPF 60 LLLDEKKRLL LYPLLTSWRE DAYATSESEF PMKKWVHVGC EVTKDLLRLY LDGEIVGEKS 120 LTSSLNNDSV SDSSEISLPC ISGKGSQLDG YVYSAELLPV VSSIKNHYVK DPPVQLSIDS 180 SSAYEIEEDT DGVWSIVGGK ASCRRNFSLD VTLMDSFSRP ITEEVEVVAL LVYADDEAPV 240 EKPVDDEAPL LTNYDGIEYA SSDRPSKVIS GRASFKLKIS QLSSKCDNRL FCIRFEIPKM 300 GNYPFLEVFS RPIRCISRNR NTRAASLMLR KSSLGIHLLN GSQSPILEDG SSDLPSIVRE 360 AKQSLSSKRV KLGQEKLCAN FKDDFVLQQA NGESKSHSWI SEDNYAYHNS LVARPVSRGR 420 AENFSSDSEN SETTNSVIDD LPSNRDPISD VDVFKYCLGD LNERRLLLKE MAVTAKEEEL 480 ATFAERVSLF SGCSHHRHQI SISKRLIEEG IKCWNLISDD NHHVPWMNLV SGLQEHFLKM 540 TFGRTRSLTH QDFDLLRRVS SCQDLVSQDN FEKLWCWLYP VAFTLSQQCI TSLWGSASPV 600 WIEGFITKEE AESSLRGQGP GTFILRFPTS RSWPHPDAGN LVATYVGSDY TIHHRLVSLD 660 FIYSFGSKGM TIKPIQDMLL EQPELRRLGR IVRSQ

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MGIQDYGFLE DLQVEFKDYD GTNGFFLCFW FYLNKASTLP STILLQIMQK HPVATSHAPF  60
LLLDEKKRLL LYPLLTSWRE DAYATSESEF PMKKWVHVGC EVTKDLLRLY LDGEIVGEKS  120
LTSSLNNDSV SDSSEISLPC ISGKGSQLDG YVYSAELLPV VSSIKNHYVK DPPVQLSIDS  180
SSAYEIEEDT DGVWSIVGGK ASCRRNFSLD VTLMDSFSRP ITEEVEVVAL LVYADDEAPV  240
EKPVDDEAPL LTNYDGIEYA SSDRPSKVIS GRASFKLKIS QLSSKCDNRL FCIRFEIPKM  300
GNYPFLEVFS RPIRCISRNR NTRAASLMLR KSSLGIHLLN GSQSPILEDG SSDLPSIVRE  360
AKQSLSSKRV KLGQEKLCAN FKDDFVLQQA NGESKSHSWI SEDNYAYHNS LVARPVSRGR  420
AENFSSDSEN SETTNSVIDD LPSNRDPISD VDVFKYCLGD LNERRLLLKE MAVTAKEEEL  480
ATFAERVSLF SGCSHHRHQI SISKRLIEEG IKCWNLISDD NHHVPWMNLV SGLQEHFLKM  540
TFGRTRSLTH QDFDLLRRVS SCQDLVSQDN FEKLWCWLYP VAFTLSQQCI TSLWGSASPV  600
WIEGFITKEE AESSLRGQGP GTFILRFPTS RSWPHPDAGN LVATYVGSDY TIHHRLVSLD  660
FIYSFGSKGM TIKPIQDMLL EQPELRRLGR IVRSQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210354	1e-127	AC210354.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0102J11, complete sequence.
GenBank	HG975519	1e-127	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009625506.1	0.0	PREDICTED: uncharacterized protein LOC104116371 isoform X1
TrEMBL	A0A1S3YG37	0.0	A0A1S3YG37_TOBAC; uncharacterized protein LOC107775818 isoform X1
STRING	XP_009625506.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9394	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	0.0	SH2 domain protein B