PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009625285.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 330aa    MW: 37217.3 Da    PI: 10.3659
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009625285.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.9e-2989144359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     DgynWrKYGqK+ k se+prsYY+Ct+ +C +kkkvers  d++++eitY+g Hnhe
  XP_009625285.1  89 DGYNWRKYGQKMGKASECPRSYYKCTHLKCLAKKKVERSV-DGHITEITYNGWHNHE 144
                     9***************************************.***************7 PP
2WRKY87.98.9e-28258315159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++DgynWrKYGqK+vkg+++ r YYrCt+++C+v+k+v r+++dpk++ +tY+geHnh+
  XP_009625285.1 258 VKDGYNWRKYGQKVVKGNQNLRDYYRCTYPKCKVRKQVLRASTDPKAI-TTYKGEHNHD 315
                     58*******************************************975.89*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2584146IPR003657WRKY domain
SuperFamilySSF1182905.36E-2386146IPR003657WRKY domain
SMARTSM007741.1E-3087145IPR003657WRKY domain
PfamPF031063.8E-2189144IPR003657WRKY domain
PROSITE profilePS5081121.43689146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-29246317IPR003657WRKY domain
SuperFamilySSF1182904.18E-24251317IPR003657WRKY domain
PROSITE profilePS5081127.921253317IPR003657WRKY domain
SMARTSM007744.0E-29258316IPR003657WRKY domain
PfamPF031064.7E-22259315IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
TLISVILNYG KQPASSDRSP ARSNLRHPSA AALCRPISIT PLTVKVKGPL QTRLDNKPSD  60
KQSKQFELPE VSQSENMTSF GALHKPACDG YNWRKYGQKM GKASECPRSY YKCTHLKCLA  120
KKKVERSVDG HITEITYNGW HNHELPQPSK KRKDGSALNG TDCSEVRPDI RTHDRTVVNS  180
SDVSSPSRPD QVSTQLASLL LVKRKRAETK NYLIEVDEGH DEPDAKRKKK AVKTLASSHG  240
TVAGSKIVLP TRSEVDVVKD GYNWRKYGQK VVKGNQNLRD YYRCTYPKCK VRKQVLRAST  300
DPKAITTYKG EHNHDTPAYK TQQRYLALRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25893181078Probable WRKY transcription factor 4
2lex_A1e-25893181078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018633200.10.0PREDICTED: probable WRKY transcription factor 33, partial
TrEMBLA0A1J6K6Q11e-164A0A1J6K6Q1_NICAT; Putative wrky transcription factor 3
STRINGXP_009625285.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-71WRKY DNA-binding protein 3