PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009625277.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 412aa    MW: 46430.3 Da    PI: 4.4265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009625277.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-194998255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  XP_009625277.1 49 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 98
                    789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-3148105No hitNo description
Gene3DG3DSA:3.30.730.101.7E-2749105IPR001471AP2/ERF domain
PfamPF008471.0E-134998IPR001471AP2/ERF domain
SMARTSM003801.2E-3649112IPR001471AP2/ERF domain
PROSITE profilePS5103219.55949106IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1949107IPR016177DNA-binding domain
PRINTSPR003676.1E-85061IPR001471AP2/ERF domain
PRINTSPR003676.1E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MARKRRASVG LGENKTRNDD QAGNAAWNEM VKEAAAAAAL GGARRARKRF VGVRQRPSGR  60
WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD EAACLLRGAN TRTNFWPSSS SSSSTPALPS  120
KITNLLLNRL KARNNSLAAA TSAASSEPVE IRDQDKQLEE YRDETVYFSD SQFMEYLKDP  180
EDQITDNNMI SNTSAINTNN FTNTLEACLT ENDYSIVQPV MKSDEINWSG GEINNNLVED  240
EEEIEEENDS TDIGDVEPIN FHFVDEIGSS CYYSPFEIAE EINSTDTMDQ QGIFYGDESC  300
ISEAMRRMNY ERKFSASLYA FNGITECLKL KLKSGGVVQR ERCEQLSRLR NACKRNRKEE  360
EEDEKKINEE GISTKMGERK ETECTSQSSI TYESELSLWS SIDLPPICAF FT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12491051471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625277.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA0A1S3ZU860.0A0A1S3ZU86_TOBAC; dehydration-responsive element-binding protein 2C-like
STRINGXP_009625277.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11