PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009625187.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 223aa MW: 24488.7 Da PI: 7.7605

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009625187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.9	1.1e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_009625187.1 2 SCNGCRILRKGCNENCILRQSLqgienPHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFEACGRTVNPVHGAVGLLWTGNWHVCQS 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l XP_009625187.1 97 AVETVLK 103 *998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.806	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSCNGCRILR KGCNENCILR QSLQGIENPH AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHVCQSAVET VLKGGVLRPL PEFSGVTALP 120 ETDSGSEAND VDLFRSQSFN FRSKRKVMDE VAEDLDLGLT SGFPAKMAAA GGRMNRRTEK 180 RREATPSLNS DESDTTTLES GFMCHQNPQQ RQGDDTKLLR LFF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009625187.1	1e-165	PREDICTED: LOB domain-containing protein 37-like
Refseq	XP_016477118.1	1e-165	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	4e-70	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A1S4AL07	1e-164	A0A1S4AL07_TOBAC; LOB domain-containing protein 37-like
STRING	XP_009625187.1	1e-165	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-72	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]